Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i23
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    30   0.16 
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    29   0.37 
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    29   0.37 
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    29   0.49 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   1.5  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   1.5  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   7.9  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   7.9  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.9  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   7.9  

>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 186 ICLVLYGIINNGRLFISESLAIFNCILHYFIYIFLFHFRFGSSALAKRLVNAIF 25
           IC VL+G I  G L + ++L    C +   + +FL + R     L K + + +F
Sbjct: 163 ICFVLFGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLPFWTL-KHMFSGLF 215


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 186 ICLVLYGIINNGRLFISESLAIFNCILHYFIYIFL 82
           IC +L+G + +GRL ++++L    C +   ++  L
Sbjct: 219 ICFILFGCVKDGRLNLNKALICSTCSISAALFFIL 253


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 186 ICLVLYGIINNGRLFISESLAIFNCILHYFIYIFL 82
           IC +L+G + +GRL ++++L    C +   ++  L
Sbjct: 209 ICFILFGCVKDGRLNLNKALICSTCSISAALFFIL 243


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 119 KMASDSDINNLPLLMIPYKTRQMLSCLLNTKKII 220
           K+ SD DIN    + + YK    LS +L+ K II
Sbjct: 553 KVGSDKDINGFETMQLCYKVPFPLSLILSRKAII 586


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 119 KMASDSDINNLPLLMIPYKTRQMLSC--LLNTKKIIPSD 229
           ++   +    LP+++I   TRQ++ C  LLN K +I  D
Sbjct: 787 ELIKSNGFKGLPIVVIKSITRQLIQCLTLLNEKHVIHCD 825


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 197 GTITFVLFYMESLITAD-CLYQSRW-PFSTAFCTISFI 90
           GTIT++LF+M SL+     +Y + W   +  + T+ FI
Sbjct: 173 GTITYILFWMFSLLVGSLVVYFTAWRQITFTWITLMFI 210


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 186 ICLVLYGIINNGRLFISESLAIFNCIL 106
           IC +L+G + +G L ++++L    C +
Sbjct: 245 ICCILFGCVKSGDLNLNKALIYSTCTI 271


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 186 ICLVLYGIINNGRLFISESLAIFNCIL 106
           IC +L+G + +G L ++++L    C +
Sbjct: 212 ICCILFGCVKSGDLNLNKALIYSTCTI 238


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = -2

Query: 185 FVLFYMESLITADCLYQSRWPFSTAFCTISFIYFYFTSVL 66
           ++L+    +I A+C+   ++ F     ++ F+YF+ T ++
Sbjct: 32  WLLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYFFLTLII 71


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 403 QTLQKF*KLANSRRPVSLPYL 341
           Q ++KF  + NS  P+SLP L
Sbjct: 5   QRIEKFKDILNSEEPISLPGL 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,812
Number of Sequences: 5004
Number of extensions: 35949
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)