Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i23
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0514 - 18236061-18237392                                         30   0.85 
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287           28   3.4  
05_05_0057 + 21995018-21997006                                         28   4.5  
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565...    28   4.5  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    27   6.0  
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           27   7.9  
01_06_0039 + 25857805-25858894,25858997-25859345,25860019-258601...    27   7.9  

>09_04_0514 - 18236061-18237392
          Length = 443

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 375 PTVGDPFLCHISSTLSVLLLHWWME-PASCDDIP 277
           P V    +C ++   SVLLLHWW   PA    +P
Sbjct: 66  PFVAASHVCPVTGAGSVLLLHWWSRAPARSLPVP 99


>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
          Length = 540

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 245 PRDWRGLASLVGISSQEAGSIHQCSNKTDKVLEIWQRNGSPTVGQLLE 388
           P+ W  + +L  ISS    SIH+ S +   ++++W  +    VG  +E
Sbjct: 39  PKPWPIIGNLNLISSLPHRSIHEISKRHGPIVQLWFGSCPVVVGSSVE 86


>05_05_0057 + 21995018-21997006
          Length = 662

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 230 GPDKLPRDWRGLASLVG-ISSQEAGSIHQCSNKTDKVL-EIW 349
           GPDK PR WR   SL G I  + AG     S+  D+   E W
Sbjct: 508 GPDKKPRRWRKAWSLWGLIHRRAAGRRGGASDVADRAFSEPW 549


>04_04_0456 -
           25355409-25355751,25356047-25356205,25356317-25356513,
           25356602-25356794,25357044-25358287
          Length = 711

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 381 SWPTVGDPFLCHISSTLSVLLLHWWMEPASCD 286
           S P + D F CH +       L W  +P  CD
Sbjct: 381 SCPHIDDDFNCHKNGRADTGFLRWRWQPHGCD 412


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 263 LASLVGISSQEAGSIHQCSNKTDKVLEIW 349
           LASL  +SS +  S+H   N +D +LE W
Sbjct: 718 LASLCKLSSYKLQSLHIIYNSSDDLLERW 746


>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 263 LASLVGISSQEAGSIHQCSNKTDKVLEIW 349
           LASL  +SS +  S+H   + TD  LE W
Sbjct: 626 LASLCKLSSYKLQSLHIIDHSTDDFLERW 654


>01_06_0039 +
           25857805-25858894,25858997-25859345,25860019-25860104,
           25860242-25860399,25861489-25861565,25861656-25861722
          Length = 608

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 186 ICLVLYGIINNGRLFISESLAIFNCILHYFIYIFLFHFRFGSSALA 49
           + + +YG  + G L +   + +  CI+ Y + +FLF FR     +A
Sbjct: 113 LLIAMYGPYS-GSLMVQ--IVVLQCIIWYTLMLFLFEFRAARMLIA 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,421,014
Number of Sequences: 37544
Number of extensions: 212605
Number of successful extensions: 506
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)