Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i23
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)           28   4.6  
SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014)                 28   4.6  
SB_3558| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  
SB_38378| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   8.1  
SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)               27   8.1  

>SB_55587| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.13)
          Length = 359

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 119 KMASDSDINNLPLLMIPYKTRQMLSCLLNTKKIIPSDGPDKLPR-DWRGLASLVGISSQE 295
           K  +DSD+++      PY +    S       I+PSDGPD   R    G+  +V  S+ E
Sbjct: 102 KAGADSDLSDGKFRKCPYSSDMRAS-----DDILPSDGPDTTGRSSLFGVTPIVPTSTAE 156

Query: 296 AGS 304
             S
Sbjct: 157 TAS 159


>SB_15469| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
          Length = 709

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 147 LFISESLAIFNCILHYFIYIFLFHFRFGSS 58
           LF ++    F+ I H FI+  L H+ FGSS
Sbjct: 578 LFAADFEKAFDSIEHNFIFAVLKHYGFGSS 607


>SB_3558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 110 FCTISFIYFYFTSVLEVQHWQN 45
           F  + F+ FYFT  LEV+H  N
Sbjct: 41  FAAVFFLSFYFTLKLEVKHPSN 62


>SB_38378| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 478

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 198 RHDNICLVLYGIINNGRLFISESLAIFNCILHY 100
           +H N+ + LYGI +   ++I + L    C+LHY
Sbjct: 265 QHGNL-VQLYGICSEKPIYIIQELMKGGCLLHY 296


>SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)
          Length = 254

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 375 PTVGDPFLCHISSTLSVLLLHWW 307
           PT+ +PF  H+  T++ LLL  W
Sbjct: 219 PTIDNPFCGHLYITVTALLLSLW 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,061
Number of Sequences: 59808
Number of extensions: 252944
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)