Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i23
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   5.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 360  PFLCHISSTLSVLLLHW 310
            P L   SST S +LLHW
Sbjct: 1408 PVLYVTSSTSSSILLHW 1424


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 360  PFLCHISSTLSVLLLHW 310
            P L   SST S +LLHW
Sbjct: 1404 PVLYVTSSTSSSILLHW 1420


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 88  IFISLPFWKFSIGKTL 41
           +FI+LP WK  I  TL
Sbjct: 199 VFITLPKWKDGIPVTL 214


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 278 GISSQEAGSIHQCSNKTDKV 337
           GIS QE+G   Q  N+T  V
Sbjct: 51  GISHQESGQPKQVDNETPVV 70


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 134 SRWPFSTAFCTISF 93
           S WP+ T  C I+F
Sbjct: 174 SSWPYDTHRCRINF 187


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 390 NSRSWPTVGDPFLCHISSTLSVLLLHWWMEP 298
           N    PT+G P   H   T S+  LH+   P
Sbjct: 340 NHTMGPTMGPPHHHHHHQTQSLQHLHYRQPP 370


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 39 PSVLPMLNFQN 71
          PSV P+L F+N
Sbjct: 67 PSVYPLLRFEN 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,406
Number of Sequences: 438
Number of extensions: 2401
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)