Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10i23
(483 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 29 1.6
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 29 1.6
At3g18720.1 68416.m02377 F-box family protein contains Pfam PF00... 29 2.2
At4g39756.1 68417.m05630 kelch repeat-containing F-box family pr... 28 2.9
At1g77910.1 68414.m09079 hypothetical protein contains similarit... 28 3.8
At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00... 27 5.0
At1g19350.5 68414.m02408 brassinosteroid signalling positive reg... 27 5.0
At1g19350.4 68414.m02407 brassinosteroid signalling positive reg... 27 5.0
At1g19350.3 68414.m02405 brassinosteroid signalling positive reg... 27 5.0
At1g19350.1 68414.m02406 brassinosteroid signalling positive reg... 27 5.0
At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3... 27 8.8
At1g48510.1 68414.m05422 cytochrome c oxidase assembly protein s... 27 8.8
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 266 ASLVGISSQEAGSIHQCSNKTDKVLEIWQRNGSPTVGQLLEFLQR 400
AS+ +S+Q++G++ CS+ D + +W N S + G+ + +R
Sbjct: 206 ASVQSVSAQKSGNM-VCSSSWDCTINLWNTNESTSEGESVSVKKR 249
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 266 ASLVGISSQEAGSIHQCSNKTDKVLEIWQRNGSPTVGQLLEFLQR 400
AS+ +S+Q++G++ CS+ D + +W N S + G+ + +R
Sbjct: 206 ASVQSVSAQKSGNM-VCSSSWDCTINLWNTNESTSEGESVSVKKR 249
>At3g18720.1 68416.m02377 F-box family protein contains Pfam
PF00646: F-box domain
Length = 380
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 155 TADCLYQSRWPFSTAFCTISFI-YFYFTSVLEVQHWQ 48
T DCL S P ST+ C ISF + +V++V W+
Sbjct: 174 TRDCLTFSAAPTSTSCCVISFTPQSFLYAVVKVDTWR 210
>At4g39756.1 68417.m05630 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 374
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 236 DKLPRDWRGLASLVGISSQEAGSIHQCSNKTDKVLEIWQRNGSP 367
D ++WR + L ++ + SI + + DKVL +W+ P
Sbjct: 282 DTKHKEWRDIKGLATLNRRRRSSILEVAKYGDKVLILWEIFAKP 325
>At1g77910.1 68414.m09079 hypothetical protein contains similarity
to NADH dehydrogenase subunit 1
Length = 89
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Frame = -1
Query: 216 IFLVFNRHDNICLVLYGIINNG--------RLFISESLAIFNCILHYFIYIFL 82
++ +FN+H+ IC+ +G+ N R+F ++ I I++ +I+I++
Sbjct: 3 LYCMFNQHERICIHFFGMRNKRINLSSVQVRIFERHAVYIKGTIVYKYIFIYM 55
>At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00646
F-box domain
Length = 461
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 308 HQCSNKTDKVLEIWQRNGSPTVGQLLEFLQR 400
H+C KT K +E+W G ++LE+L R
Sbjct: 385 HECLKKTLKKVEVWSFYGGTHELRVLEYLIR 415
>At1g19350.5 68414.m02408 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 335
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 413 QICPNAAEILEVGQQSETRF 354
Q+ PN A I E+GQ SE +F
Sbjct: 284 QLSPNTAAIQEIGQSSEFKF 303
>At1g19350.4 68414.m02407 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 335
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 413 QICPNAAEILEVGQQSETRF 354
Q+ PN A I E+GQ SE +F
Sbjct: 284 QLSPNTAAIQEIGQSSEFKF 303
>At1g19350.3 68414.m02405 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 357
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 413 QICPNAAEILEVGQQSETRF 354
Q+ PN A I E+GQ SE +F
Sbjct: 306 QLSPNTAAIQEIGQSSEFKF 325
>At1g19350.1 68414.m02406 brassinosteroid signalling positive
regulator, putative similar to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 335
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 413 QICPNAAEILEVGQQSETRF 354
Q+ PN A I E+GQ SE +F
Sbjct: 284 QLSPNTAAIQEIGQSSEFKF 303
>At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3)
similar to auxin transport protein [Arabidopsis
thaliana] gi|5817301|gb|AAD52695
Length = 640
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -1
Query: 186 ICLVLYGIINNGRLFISESLAIFNCILHYFIYIFLFHFR 70
+ + +YG + G L + + + CI+ Y + +FLF FR
Sbjct: 120 LLIAMYGEYS-GSLMVQ--IVVLQCIIWYTLLLFLFEFR 155
>At1g48510.1 68414.m05422 cytochrome c oxidase assembly protein
surfeit-related contains similarity to Swiss-Prot:Q9QXU2
surfeit locus protein 1 [Rattus norvegicus]
Length = 384
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +2
Query: 152 PLLMIPYKTRQMLSCLLNTKKIIPSDGPDKLPRDWRGLASLVGISSQEAGSIHQCSNKTD 331
PLL IP + M S +L + +PSD + + G LV + + + S++
Sbjct: 144 PLLPIPNEPNSMKSPILVNRGWVPSDWKEN-SLESLGTGGLVAAAKESRKANKLLSSQQS 202
Query: 332 KVLEIWQRNGSPTV 373
+ + W + +P +
Sbjct: 203 LLSKFWYKLNNPMI 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,496,348
Number of Sequences: 28952
Number of extensions: 178904
Number of successful extensions: 489
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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