Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10i22
(458 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23) 181 3e-46
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 30 1.1
SB_10243| Best HMM Match : Ank (HMM E-Value=0) 30 1.1
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 28 3.2
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 27 5.6
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 27 7.5
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022) 27 7.5
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 27 7.5
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 27 7.5
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 27 7.5
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 7.5
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 7.5
SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14) 27 7.5
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 27 9.9
SB_30675| Best HMM Match : Ribosomal_L5_C (HMM E-Value=7.6) 27 9.9
SB_20260| Best HMM Match : fn3 (HMM E-Value=0) 27 9.9
SB_15798| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-33) 27 9.9
SB_19169| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_505| Best HMM Match : F5_F8_type_C (HMM E-Value=4.80645e-43) 27 9.9
>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
Length = 145
Score = 181 bits (440), Expect = 3e-46
Identities = 84/106 (79%), Positives = 96/106 (90%)
Frame = +1
Query: 19 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 198
RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A
Sbjct: 23 RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82
Query: 199 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 336
TVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N V V +
Sbjct: 83 TVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 67 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 159
L +GA ++CADN G L +A QG +N
Sbjct: 913 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943
>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
Length = 475
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 67 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 159
L +GA ++CADN G L +A QG +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 351 ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 220
A FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 164 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 21
SLF++ T T AP L + APT P ++ AP PP P
Sbjct: 67 SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114
>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 342 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 220
FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 2 FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42
>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 150 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 52
T + + +I CP VVG V+ CS W T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 60 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 197
P S SS+ R +H+GK S RSP T G HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSH-SNHDAG 151
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 374 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 234
AT V A + L T+ PAL++K+IN +R N + L+ +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 119 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 18
R + P L + AP+G P + + APA P PRPL
Sbjct: 283 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
Length = 192
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 351 ALHFALVIDYDTRIVLKVYK-YSITPSE 271
AL FAL + YDT+I++ K YSI+P E
Sbjct: 137 ALLFALYLVYDTQIMMGGGKMYSISPEE 164
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 119 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 18
R + P L + AP+G P + + APA P PRPL
Sbjct: 287 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 119 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 18
R + P L + AP+G P + + APA P PRPL
Sbjct: 963 RAYTPALPT-IPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 119 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 18
R + P L + AP+G P + + APA P PRPL
Sbjct: 1092 RAYTPALPT-IPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 197 ATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 78
AT S + A+ SL PW+ T+R P +SA+ TA
Sbjct: 816 ATSRSGDSASRSLTNLGCYPWSKQTFRHEGPPISARPCTA 855
>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 820
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 78 SSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDC 194
+S RR+ RG+ CD C YQ Q + RG DC
Sbjct: 440 TSKNYRRKQRGQGKQCDNC-GYQHMANQESCPA-RGKDC 476
>SB_7198| Best HMM Match : rve (HMM E-Value=3.5e-14)
Length = 865
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 119 RFFAPVLSAQLITAPTGRPREIRNFAPAEP-PRPL 18
R + P L + AP+G P + + APA P PRPL
Sbjct: 805 RAYTPALPT-IPQAPSGAPAKTLSVAPAAPSPRPL 838
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 63 GSPSGSSNQLRRQH--RGKESVCDRCPRYQRSPEQTAGGRFRGH 188
G P G Q + H RG + DR PR S T+GG GH
Sbjct: 306 GPPDGPHGQRMQHHDIRGPDPRGDRGPRGPPSGVPTSGGPPPGH 349
>SB_30675| Best HMM Match : Ribosomal_L5_C (HMM E-Value=7.6)
Length = 330
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 98 SAQLITAPTGRPREIRNFAPAEPPRPLLDIL 6
SA AP G PR+++ P PPRP + ++
Sbjct: 114 SAYFAGAPKGHPRDLQTRTP--PPRPCVRLI 142
>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1428
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/83 (20%), Positives = 31/83 (37%)
Frame = -3
Query: 261 LPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAVDY 82
LPD+ + R+ + N PG R+ S + +D + + ++C Y
Sbjct: 1340 LPDNRFSASTIYDSRYHPYYARLNGSPGWCRKSSDPKGYLQIDLNAVFVVCAVATQGASY 1399
Query: 81 CSHWETQGDTEFRSRGTTTSSLR 13
+ W T +F S+ R
Sbjct: 1400 GTEWVTSYKVQFSMDNQAWSTYR 1422
>SB_15798| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-33)
Length = 156
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/83 (20%), Positives = 31/83 (37%)
Frame = -3
Query: 261 LPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAVDY 82
LPD+ + R+ + N PG R+ S + +D + + ++C Y
Sbjct: 19 LPDNRFSASTIYDSRYHPYYARLNGSPGWCRKSSDPKGYLQIDLNAVFVVCAVATQGASY 78
Query: 81 CSHWETQGDTEFRSRGTTTSSLR 13
+ W T +F S+ R
Sbjct: 79 GTEWVTSYKVQFSMDNQAWSTYR 101
>SB_19169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 354 GHHRACSQRMC*SVAAYCLKRELYRL 431
G+ R CS RM S + CLK + RL
Sbjct: 14 GNSRGCSTRMTRSFGSLCLKNDPMRL 39
>SB_505| Best HMM Match : F5_F8_type_C (HMM E-Value=4.80645e-43)
Length = 235
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/83 (19%), Positives = 32/83 (38%)
Frame = -3
Query: 261 LPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAVDY 82
+PD+ + R+ + N PG R+ S + + +D + + ++C Y
Sbjct: 1 MPDNRFSATTIYDSRYHPYYARLNGSPGWCRKSSDTSGYLQIDLNAVFVVCAVATQGASY 60
Query: 81 CSHWETQGDTEFRSRGTTTSSLR 13
+ W T +F S+ R
Sbjct: 61 GTEWVTSYKVQFSMDNQAWSTYR 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,489,261
Number of Sequences: 59808
Number of extensions: 345545
Number of successful extensions: 918
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -