Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i21
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.4  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   2.5  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   4.4  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +1

Query: 229  FNLLDFDIEELEEALLTDGTEESASSLLTELIVRLLNGCLGNNDV-SAFNYQMYLRRLFR 405
            F  + F+   L   L T G +  ++  L++ +  + +  +   D+ ++      +R+L R
Sbjct: 2185 FASIPFEKLSLNTKLSTIGIDSISAIQLSKDLREIFHLRISALDILNSSTINSLIRKLKR 2244

Query: 406  RKCQETGRYNPFNTDIDFQFLPLRTKVEILYALCD 510
            R+ +   R +  +  ID  F  +R ++ I   LCD
Sbjct: 2245 RRTESHTRNDKIHESIDQFFKDIRKQILIPQTLCD 2279


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 181 WEVPSIAYFCSLFRTAFNLLDFDIEELEEALLTDGTEESASSLLTELIVRLLNGCL 348
           W + ++  +C+L +TA N+L+F+I       L+  T  + +S      + +LNG +
Sbjct: 18  WNIHNL--YCNLTQTADNILNFEIPSGVSCQLSSLTSSNFASGCKISAMPILNGSM 71


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 149 FIQTSLLTVFFPRKQLTGVRFH--SNKPKIHDIVCIMWVQ 36
           F++TSL T   PR+ L  +R +  + KP   +  CIMW +
Sbjct: 633 FLETSLKTSSNPREVLENIRDYLVTEKPLSFE-ECIMWAR 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,304
Number of Sequences: 5004
Number of extensions: 51957
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)