Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i21
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822...    36   0.017
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650...    31   0.83 
04_01_0596 - 7852529-7855185,7855545-7855581                           29   1.9  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    28   5.9  

>03_06_0345 -
           33281126-33281783,33281872-33282063,33282175-33282217,
           33282751-33282874,33282966-33283058,33284484-33284685,
           33284751-33284857,33285462-33285543,33285629-33285666,
           33285751-33285837,33286324-33286434,33286554-33286904
          Length = 695

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
 Frame = +1

Query: 169 IQSWWEVPSIAYFCSLFRTAFNL-LDFDIEELEEALLT-DGTEESASSLLTELIVRLLNG 342
           ++  WE+ S+  F  +FR   N+ ++F  EELEEA+L+ + T +     L + I  +   
Sbjct: 103 LRGMWELASVINFLHVFRPLLNITVEFTAEELEEAILSPNNTLDDVHMPLLKSIPPVTRM 162

Query: 343 CLGNNDVSAFNYQMYLRRLFRRKCQ-ETGRYNPFNTDID-FQFLPLRTKVEILYALCDFR 516
            +G         +  L+  +    + +         +I+ ++ L   T++ IL A+CD R
Sbjct: 163 AMGRGTWITVLCRK-LKYWWNWVAEGDLPIVASHGAEIEMYKALEPATRLVILKAICDIR 221

Query: 517 LDAEDV 534
           ++ ED+
Sbjct: 222 VEQEDI 227


>05_03_0415 -
           13661745-13664240,13664376-13664401,13665018-13665035,
           13665914-13666181,13666531-13666598,13667102-13667243
          Length = 1005

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 123 YRQK*CLNEFLTVFRHPIMVGSAQYCVLLFPIQDCIQPLG 242
           Y Q+ C +E L VFR  I  GS   CV +  +      LG
Sbjct: 491 YSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLG 530


>04_01_0596 - 7852529-7855185,7855545-7855581
          Length = 897

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 123 YRQK*CLNEFLTVFRHPIMVGSAQYCVLLFPIQDCIQPLG 242
           Y Q+ C +E L +FR  I  GS   CV +  +      LG
Sbjct: 383 YSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLG 422


>11_01_0298 -
           2231063-2232015,2232124-2232798,2232918-2232946,
           2233053-2233513,2233593-2233717,2233801-2234098,
           2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 451 IDFQFLPLRTKVEILYALCDFRLDAEDV 534
           I++  LP+  K+ IL  LCD  +D+E++
Sbjct: 445 IEYYKLPVTLKLRILQLLCDHVIDSEEL 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,898,286
Number of Sequences: 37544
Number of extensions: 299339
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)