Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i21
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           45   4e-05
SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)             30   1.1  
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              27   7.9  
SB_41151| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_54590| Best HMM Match : rve (HMM E-Value=4.8e-35)                   27   7.9  
SB_22873| Best HMM Match : EGF_CA (HMM E-Value=1.2e-14)                27   7.9  

>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 25/46 (54%), Positives = 31/46 (67%)
 Frame = +1

Query: 424 GRYNPFNTDIDFQFLPLRTKVEILYALCDFRLDAEDVFDLFKNLEA 561
           G Y+  + DI F+ L  + KVEIL+ LCDFRLD  DV DL K L+A
Sbjct: 5   GLYDLRHCDI-FRQLTTQQKVEILHDLCDFRLDVGDVPDLLKGLDA 49


>SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 486

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
 Frame = +1

Query: 280 DGTEESA--SSLLTELIVRLLNGCLGNNDVSAFNYQMYLRRLFRRKCQ--ETGRYNPFN- 444
           D T E+    SLLT+ ++     CL  +   + N+++ L +  R  C+   T RYN    
Sbjct: 37  DATNETVVQKSLLTDDVMDCSFECLSEDWCHSLNFRLTLTKSGRHVCELISTDRYNHSEH 96

Query: 445 --TDIDFQFLPLRTKVEILYALCDFRLDAEDVFDLFKNLEA 561
              D DF  L ++ ++ I +    +R   +++   ++ + +
Sbjct: 97  LVQDKDFVHLGIKIELTISFVSSHYRGKGKEIRQNYRRIRS 137


>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 166 DIQSWWEVPSIAYFCSLFRTAFNLLDFDIEELEEALLTD-GTEESASSL-LTELIVRLLN 339
           D+ SW  V     F  LFR A  ++   ++ + EA L++ G  +S+  L L   I  L  
Sbjct: 133 DVMSWLAVTHFYTFAELFRDA-EMMGSKLKSMNEASLSELGINDSSQQLSLLHAINELFT 191

Query: 340 GCLGNNDVSAF 372
           G     + S F
Sbjct: 192 GSSPKREPSNF 202


>SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 804

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 313 SGGNWQILLCHL*EVLLPILQYQNPRG 233
           + G+W I LCH+  V+ P+    NP G
Sbjct: 67  ANGDWSIYLCHI-RVIEPVHTKHNPDG 92


>SB_41151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 191 PVLRTFVPYSGLHSTSWILILKNWKKHFSQMAQKNLPVPS 310
           PV+ ++V Y  L + S  +  +N     S +A KNLPV S
Sbjct: 125 PVISSYVAYESLTAISSNVAYENLPVISSNLAYKNLPVIS 164


>SB_54590| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1309

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 427 RYNPFNTDIDFQFLPLRTKVEILYALCDFRLDAEDVFDLFKNLE 558
           R NP+  D++   L ++ +++   AL    +  ED+FD  KN+E
Sbjct: 261 RQNPYVVDVELNGLKVQMELDTGAALS---VIGEDIFDQLKNIE 301


>SB_22873| Best HMM Match : EGF_CA (HMM E-Value=1.2e-14)
          Length = 434

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = +1

Query: 280 DGTEESA--SSLLTELIVRLLNGCLGNNDVSAFNYQMYLRRLFRRKCQ--ETGRYNPFN- 444
           D T E+    SLLT+ ++     CL  +   + N+++ L +  R  C+   T RYN    
Sbjct: 37  DATNETVVQKSLLTDDVMDCSFECLSEDWCHSLNFRLTLTKSGRHVCELISTDRYNHSEH 96

Query: 445 --TDIDFQFLPLRT 480
              D DF  L ++T
Sbjct: 97  LVQDKDFVHLGIKT 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,246
Number of Sequences: 59808
Number of extensions: 358736
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)