Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i21
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.2  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   3.7  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   3.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +1

Query: 385 YLRRLFRRKC--QETGRYNPFNTDIDF---QFLPLRTKVEILYALC 507
           ++R  F RK   Q   RY     + +F   ++L  R ++EI +ALC
Sbjct: 263 WMRSQFERKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALC 308


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +1

Query: 403 RRKCQETGRYNPFNTDIDF---QFLPLRTKVEILYALC 507
           +R  Q   RY     + +F   ++L  R ++EI +ALC
Sbjct: 9   KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALC 46


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +1

Query: 427 RYNPFNTDIDFQF---LPLRTKVEILYALC 507
           RY     + +F F   L  R ++EI +ALC
Sbjct: 17  RYQTLELEKEFHFNRYLTRRRRIEIAHALC 46


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 303 TGRFFCAICEKCFFQFF 253
           TG   C +C+  F+Q +
Sbjct: 189 TGPSHCVVCQNFFYQIY 205


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 353 TMTFLHLIIRCI*EDCLEENVK 418
           T+TF +L I+C+ +  +EE +K
Sbjct: 137 TVTFANLGIQCVKKKDIEEALK 158


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 353 TMTFLHLIIRCI*EDCLEENVK 418
           T+TF +L I+C+ +  +EE +K
Sbjct: 137 TVTFANLGIQCVKKKDIEEALK 158


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 145 MNFSRFLDIQSWWEVPSIAYFCSLFRTAFNLL 240
           +  SR +   S WE        S+F   FNL+
Sbjct: 220 LRLSRLVRYVSQWEEVYFLNMASVFMRIFNLI 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,081
Number of Sequences: 438
Number of extensions: 3480
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)