Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i21
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r...    33   0.099
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r...    33   0.099
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai...    32   0.30 
At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    27   6.5  
At1g15600.1 68414.m01875 hypothetical protein                          27   6.5  
At1g73770.1 68414.m08541 hypothetical protein                          27   8.6  

>At5g35210.2 68418.m04175 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1409

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +1

Query: 283 GTEESASSLLTELIVRLLNGCLGNNDVSAFNYQMYLRRLFRRKCQETGR----YNPFNTD 450
           G  E  SS  + L  + L  C+  + +    + +YL + F      +G     +N F  +
Sbjct: 248 GHLERLSSSKSVLASKCLR-CIDWSLLDVLTWPVYLVQYFTAMGHASGPQWNIFNKFVVE 306

Query: 451 IDFQFLPLRTKVEILYALCDFRLDAEDVFD 540
           I++  LP+  K++IL  LCD   D  D+ D
Sbjct: 307 IEYYSLPIGMKLKILQILCDDIFDVADLRD 336


>At5g35210.1 68418.m04174 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1576

 Score = 33.5 bits (73), Expect = 0.099
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +1

Query: 283 GTEESASSLLTELIVRLLNGCLGNNDVSAFNYQMYLRRLFRRKCQETGR----YNPFNTD 450
           G  E  SS  + L  + L  C+  + +    + +YL + F      +G     +N F  +
Sbjct: 248 GHLERLSSSKSVLASKCLR-CIDWSLLDVLTWPVYLVQYFTAMGHASGPQWNIFNKFVVE 306

Query: 451 IDFQFLPLRTKVEILYALCDFRLDAEDVFD 540
           I++  LP+  K++IL  LCD   D  D+ D
Sbjct: 307 IEYYSLPIGMKLKILQILCDDIFDVADLRD 336


>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
           aminoacyl-transfer RNA synthetases class-II signature 1,
           PROSITE:PS00179
          Length = 766

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 166 DIQSWWEVPSIAYFCSLFRTAFNL-LDFDIEELEEALLT 279
           +++S WE+ S+  F  +FR    +  +F  EE E ALLT
Sbjct: 132 NLRSMWELASVLNFLHVFRPLLKINAEFSAEEFETALLT 170


>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
           similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +1

Query: 427 RYNPFNTDIDFQFLPLRTKVEILYALCDFRLDAEDV 534
           R N F  D   Q  P+  K+EIL  LCD   DAE V
Sbjct: 521 RLNFFRNDYFRQ--PVNLKIEILSRLCDDMTDAEVV 554


>At1g15600.1 68414.m01875 hypothetical protein
          Length = 220

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +1

Query: 271 LLTDGTEESASSLLTELIVRLLNGCLGNNDVSAFNYQMYLRRLFRRKCQETGRYNPFNTD 450
           L+    EE   ++L+  I+    GC+    +  + + +Y R +      E  R    N D
Sbjct: 64  LIEPRDEEHPQTMLSIWIIGYTCGCIATLPILCWRFWLYNRSVGSESTDEYLRETRINKD 123

Query: 451 IDF 459
           +DF
Sbjct: 124 MDF 126


>At1g73770.1 68414.m08541 hypothetical protein 
          Length = 191

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 217 FRTAFNLLDFDIEELEEALLTDGTEESASSLLTELIVRLLNGCLGNND 360
           FRT   L   ++++  ++ L DG E++   L   L++R L+G   ++D
Sbjct: 58  FRTEEVLSKEELKKRIQSFLDDGNEDAIPDLFEALMIRKLSGKHDDSD 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,115
Number of Sequences: 28952
Number of extensions: 259893
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)