Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10i20
(479 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 229 1e-61
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 229 1e-61
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 229 1e-61
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 118 6e-28
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.36
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 2.6
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 26 2.6
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 3.4
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 4.5
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 7.8
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 25 7.8
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 25 7.8
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 229 bits (561), Expect = 1e-61
Identities = 112/120 (93%), Positives = 116/120 (96%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTXLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDT LCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 229 bits (561), Expect = 1e-61
Identities = 112/120 (93%), Positives = 116/120 (96%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTXLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDT LCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 229 bits (561), Expect = 1e-61
Identities = 112/120 (93%), Positives = 116/120 (96%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 295
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 296 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTXLCAIHAKRVTI 475
LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDT LCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 118 bits (283), Expect = 6e-28
Identities = 65/106 (61%), Positives = 81/106 (76%), Gaps = 10/106 (9%)
Frame = +2
Query: 191 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD--- 349
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 350 -FKTD--LRFQSAAIGALQEASEAYLVGLFEDTXLCAIHAKRVTIM 478
F TD LR+QS A+ LQEA+EA+LV LFEDT LCAIHAKRVTIM
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIM 107
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.36
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +2
Query: 221 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 382
+ + HR + +L E + +++ S LLI P Q +RE+A DF +F +
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566
Query: 383 IGALQEASEAYLVGLFE 433
+ A E EAY+ L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 2.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 445 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 269
Q+G F +AN I A + + E + EIL ER L+ K+ +R T+N
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 111 KQWLVLNKQPVNLLEVKLRVNNLLQ 185
K++L L K PV L++ K N+L+
Sbjct: 12 KEYLALQKNPVELVDAKPATENILE 36
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 257 ALREIRRYQKSTELLIRKLPFQR 325
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 400 LLESSDGGRLETQISFEILSD 338
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 203 APSTGGVKKPHRYRPGTVALREIRRY 280
APS G K P P T+ + EIRR+
Sbjct: 25 APSGLGWKSPSLAEPFTLPISEIRRF 50
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 422 QRDKPRLPPGELRWRQTGNANQ 357
Q PR+PP R + GN+NQ
Sbjct: 38 QYQPPRMPPPSTRPQTDGNSNQ 59
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 457 VNSTQVGVFEQANEISLACLLESSDGGRLET 365
+N Q+ E A++ SLACL +SDG L T
Sbjct: 176 INCKQITKIE-AHKDSLACLAFNSDGTMLAT 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,234
Number of Sequences: 5004
Number of extensions: 32275
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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