Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i19
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   8e-29
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       34   0.065
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.065
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             32   0.26 
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)                 32   0.35 
SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28)         31   0.46 
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)                   27   7.5  
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.5  

>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score =  123 bits (297), Expect = 8e-29
 Identities = 62/92 (67%), Positives = 68/92 (73%)
 Frame = +3

Query: 192 MDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEIS 371
           M+  PN TIY               SLYAIFSQFG ILDIVA+KTLKMRGQAFV+FK+I 
Sbjct: 1   MENPPNQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIG 60

Query: 372 SATVALRSMQGFPFYDKPMRIQYSKIDSDIIA 467
           SAT ALRSMQGFPFYDKPMRIQY+K  SD +A
Sbjct: 61  SATNALRSMQGFPFYDKPMRIQYAKGKSDAVA 92


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 276 AIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRI 434
           A+F  FG +  +  +   +T + +G  FV F+E  +A  A+  M GF    +P++I
Sbjct: 260 AVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315


>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 306 DIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPM 428
           DI  MK  +M+GQAFV       A  ALR + G+  + KP+
Sbjct: 282 DIRLMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 282 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKIDS 455
           F ++G++  +V  +   +  QA V F  + SAT+A   M+G   + + +R+++   +S
Sbjct: 348 FGRYGRVTKVVINR---VTNQALVSFDSVDSATIAHAQMKGRTMFSRRVRVEFVSRES 402



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 282 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSM 398
           F ++G+++D+   K       AFV F E+SSA  A R M
Sbjct: 269 FERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRKM 307


>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
          Length = 97

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 282 FSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 437
           F Q+G I D+  +K   T + RG  +V F + SSA +A   M G    D P  I+
Sbjct: 43  FEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDGRNIGDDPKPIK 97


>SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28)
          Length = 261

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 132 NSIEPM*VKAESNWILPNSFYRSRQF 55
           N+ EP  +  + +W+ PN ++RSR+F
Sbjct: 12  NTYEPSYLWTDGDWVAPNEYFRSREF 37


>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 270 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 446
           L+  F Q G    +  +   +M+GQAFV F +   A  A   + G+    +P+ I++ +
Sbjct: 133 LFLRFQQNGAPKLVFRLMKGRMKGQAFVTFPDSEVAIKAHSLVNGYRLKGRPVIIEFGR 191


>SB_40823| Best HMM Match : rve (HMM E-Value=1.4e-12)
          Length = 651

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 275 CNIFTIWSNIGYSSNENLKNAWSSICYFQGNFKCHCCF 388
           C +FT+        ++ L +A S +C F   F+CH  F
Sbjct: 269 CTVFTVVDMSSCYWHKKLSDAASLLCTFNTPFECHLEF 306


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 282 FSQFGQILDIVAMKTLKMRGQ--AFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 446
           F +FG +LD+   +  + +G   AFV F ++  A  A  +MQG       ++I Y +
Sbjct: 257 FEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQGQCIGRNHIKIGYGR 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,971
Number of Sequences: 59808
Number of extensions: 277084
Number of successful extensions: 476
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)