Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i19
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   3.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.6  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   8.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 464 YYITINF*ILNSHWFIIEWKSLH 396
           Y++ + F I+ S+WFII+  + H
Sbjct: 225 YFVPL-FLIIYSYWFIIQAVAAH 246


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 464 YYITINF*ILNSHWFIIEWKSLH 396
           Y++ + F I+ S+WFII+  + H
Sbjct: 101 YFVPL-FLIIYSYWFIIQAVAAH 122


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 102 ESNWILPNSF 73
           +SNWI+ NSF
Sbjct: 30  DSNWIITNSF 39


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 390 RSMQGFPFYDKPMRIQYSKIDSDI 461
           RS++G+PF       QY +++  +
Sbjct: 112 RSLEGYPFNPCLTEAQYKEMEEKV 135


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 390 RSMQGFPFYDKPMRIQYSKIDSDI 461
           RS++G+PF       QY +++  +
Sbjct: 128 RSLEGYPFNPCLTEAQYKEMEEKV 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,342
Number of Sequences: 438
Number of extensions: 2799
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)