Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10i19
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 107 4e-24
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 107 4e-24
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 107 6e-24
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 95 4e-20
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 40 0.001
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 38 0.004
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.023
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 35 0.040
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.093
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 32 0.22
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 32 0.22
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 32 0.22
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit... 31 0.38
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit... 31 0.38
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 31 0.38
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 31 0.50
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 31 0.66
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 30 1.1
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 1.5
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 2.0
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 29 2.0
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 29 2.0
At5g23590.1 68418.m02768 DNAJ heat shock N-terminal domain-conta... 29 2.7
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.7
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.7
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.7
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 28 3.5
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 28 3.5
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 28 3.5
At3g51650.1 68416.m05664 expressed protein 28 3.5
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 28 3.5
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 27 6.1
At3g51640.1 68416.m05663 expressed protein 27 6.1
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 27 8.1
At2g42245.1 68415.m05229 RNA-binding protein-related similar to ... 27 8.1
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 107 bits (258), Expect = 4e-24
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +3
Query: 186 MTMDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKE 365
+T DI PN +IY SLY +FSQFG++LD+VA+KT K+RGQA+V+F E
Sbjct: 2 LTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTE 61
Query: 366 ISSATVALRSMQGFPFYDKPMRIQYSKIDSDII 464
+++A+ A+R MQ FPFYDKPMRIQY+K SD +
Sbjct: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYV 94
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 107 bits (258), Expect = 4e-24
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +3
Query: 186 MTMDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKE 365
+T DI PN +IY SLY +FSQFG++LD+VA+KT K+RGQA+V+F E
Sbjct: 2 LTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTE 61
Query: 366 ISSATVALRSMQGFPFYDKPMRIQYSKIDSDII 464
+++A+ A+R MQ FPFYDKPMRIQY+K SD +
Sbjct: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYV 94
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 107 bits (256), Expect = 6e-24
Identities = 50/94 (53%), Positives = 65/94 (69%)
Frame = +3
Query: 186 MTMDIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKE 365
+T DI PN +IY SLY +FSQFG+ILD+VA+KT K+RGQA+V F E
Sbjct: 2 LTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSE 61
Query: 366 ISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIA 467
+++A A+R MQ FPFYDKPMR+QY+K SD +A
Sbjct: 62 VTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLA 95
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 94.7 bits (225), Expect = 4e-20
Identities = 44/91 (48%), Positives = 58/91 (63%)
Frame = +3
Query: 195 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 374
++ PN TIY SL A+FSQFG+IL+I+A KT K +GQA+V+F S
Sbjct: 13 EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72
Query: 375 ATVALRSMQGFPFYDKPMRIQYSKIDSDIIA 467
A+ A+ M FPFYDK MRIQY+K SD++A
Sbjct: 73 ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVA 103
Score = 31.9 bits (69), Expect = 0.28
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 339 GQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 446
G AFV F + +TVA++ +QGF M I Y+K
Sbjct: 214 GIAFVEFADEMQSTVAMQGLQGFKIQQNQMLITYAK 249
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +3
Query: 303 LDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 446
L + M+ +MRGQAF+ F + A AL + GF F KPM IQ+ +
Sbjct: 386 LGVRLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGR 433
Score = 31.1 bits (67), Expect = 0.50
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 279 IFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKIDSD 458
+FSQ+G + K+R AFV FK + A+ A R + G F K +++Q + +D
Sbjct: 47 LFSQYGASA-VRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLRFLGKVLQVQRANKPND 105
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 282 FSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSKID 452
F +FG+ L+ +A + R AFV F A A+ S+QGFP P+RI+++K +
Sbjct: 43 FLRFGE-LESLAFQP--GRSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFAKAE 96
Score = 30.3 bits (65), Expect = 0.87
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 279 IFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 446
+FS FG+I + R AFV F+ + +A A S+QG F + + I ++K
Sbjct: 171 VFSSFGEITKVTVFPG---RSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAK 223
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.5 bits (78), Expect = 0.023
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +3
Query: 267 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYSK 446
+L IF +G++ + +T R Q FV F ++ A ALR M G KPM IQ+S+
Sbjct: 198 TLRHIFQVYGEVKQV--RETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 34.7 bits (76), Expect = 0.040
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 440
L +F FG ++ + + T + RG +V I+SA +A+ S+ G + MR++Y
Sbjct: 124 LLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRY 183
Query: 441 S 443
S
Sbjct: 184 S 184
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.5 bits (73), Expect = 0.093
Identities = 16/60 (26%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 440
L A+FSQ+G+I+D+ ++ T K +G AF+ +++ S +A+ ++ G + +++ +
Sbjct: 52 LLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDH 111
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 32.3 bits (70), Expect = 0.22
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPF-YDK-PMRIQYS 443
L +F ++G++ D V MK+ G AFV F++ A A+R + FPF Y+K + ++++
Sbjct: 18 LERLFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWA 72
Query: 444 K 446
K
Sbjct: 73 K 73
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 282 FSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVAL 389
F QFG+IL+ V + T K +G FV F+E SAT A+
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 282 FSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVAL 389
F QFG+IL+ V + T K +G FV F+E SAT A+
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMKTLK--MRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYS 443
++ ++FG++ + L M G +V+FKE A AL+++QG + +P+ +S
Sbjct: 85 IFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFS 144
Query: 444 KI 449
+
Sbjct: 145 PV 146
>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMKTLK--MRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYS 443
++ ++FG++ + L M G +V+FKE A AL+++QG + +P+ +S
Sbjct: 85 IFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFS 144
Query: 444 KI 449
+
Sbjct: 145 PV 146
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFKEISSATVALRSM 398
++ +FS FG++ + +K T + RG AFV++ A A RSM
Sbjct: 73 IHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.1 bits (67), Expect = 0.50
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 440
+Y IF ++G I I +G AFV++++I A A+ + GF ++ + + Y
Sbjct: 35 MYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLY 91
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 30.7 bits (66), Expect = 0.66
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 270 LYAIFSQFGQI--LDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYS 443
L+ +FG+I L+I M G +V FKE A AL+++QG + +P+ +S
Sbjct: 85 LFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFS 144
Query: 444 KI 449
+
Sbjct: 145 PV 146
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYD 419
L+ +F+ FG++ I AM QA + + ++ +A VA +++G YD
Sbjct: 262 LHMVFAAFGEVQKI-AMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYD 310
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMK--TLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPM 428
L+ +FSQ+G + +V M+ + RG FV F +A A+ S+ G K +
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAM--KTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYS 443
L IF +GQI+ M + + +G FV F + A R + GF KP+ ++ +
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 444 KIDSDII 464
+ D I
Sbjct: 380 ERKEDRI 386
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 LYAIFSQFGQILDI-VAMKTL-KMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQYS 443
L +FS FGQI + + K + + G AFV F A A +++ FY + + ++++
Sbjct: 685 LRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEWA 744
Query: 444 KIDSDIIAXK*RNXSR 491
D+ + A + R+ ++
Sbjct: 745 NDDNSMEAIRKRSAAK 760
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/80 (23%), Positives = 31/80 (38%)
Frame = +3
Query: 195 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 374
D P++TI+ + A + ++ T + +G FV F + S
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 375 ATVALRSMQGFPFYDKPMRI 434
A+ M G P +PMRI
Sbjct: 210 QIRAMTEMNGVPCSTRPMRI 229
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/80 (23%), Positives = 31/80 (38%)
Frame = +3
Query: 195 DIRPNHTIYXXXXXXXXXXXXXXXSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 374
D P++TI+ + A + ++ T + +G FV F + S
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 375 ATVALRSMQGFPFYDKPMRI 434
A+ M G P +PMRI
Sbjct: 210 QIRAMTEMNGVPCSTRPMRI 229
>At5g23590.1 68418.m02768 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|P39101
CAJ1 protein Saccharomyces cerevisiae; contains Pfam
profile PF00226 DnaJ domain
Length = 296
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQG 404
L +FS+FG++ D+V +++ K + A ++ A A R++ G
Sbjct: 191 LREVFSEFGEVEDVV-IRSTKKKCSALIVMATKDGAVAATRTLCG 234
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 279 IFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 437
+FS++G ++ I + G AFV F + A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 279 IFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 437
+FS++G ++ I + G AFV F + A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 279 IFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 437
+FS++G ++ I + G AFV F + A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVE 78
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVA---MKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQY 440
LY +FS+ G+I I+ T G FV+F A++ + G D+P+R+ +
Sbjct: 50 LYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDF 109
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 279 IFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 437
+FS++G ++ I + G AFV F++ A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVE 78
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 279 IFSQFGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQGFPFYDKPMRIQ 437
+FS++G ++ I + G AFV F++ A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVE 78
>At3g51650.1 68416.m05664 expressed protein
Length = 826
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 111 VKAESNWILPNSFYRSRQFSLKQARP*HRTLLLLAK 4
V +NW+LP+ RS + S P HRT L +K
Sbjct: 669 VGGSANWVLPSEISRSIEESDMHHAPQHRTESLFSK 704
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 291 FGQILDIVAMKTLKMRGQAFVIFKEISSATVALRSMQG 404
FG+ DI + RG AF+ ++ + A A ++QG
Sbjct: 38 FGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQG 75
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 270 LYAIFSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVALR 392
L F +FG+I+ + + +T + +G FV FK+ SAT A +
Sbjct: 29 LINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
>At3g51640.1 68416.m05663 expressed protein
Length = 826
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 111 VKAESNWILPNSFYRSRQFSLKQARP*HRTLLLLAK 4
V +NW++P+ RS + S P HRT L +K
Sbjct: 669 VGGSANWVIPSEISRSIEESDMHHAPQHRTESLFSK 704
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 282 FSQFGQILDIVAM---KTLKMRGQAFVIFKEISSATVAL 389
F QFG I D+V M T + RG F+ F S + L
Sbjct: 142 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
>At2g42245.1 68415.m05229 RNA-binding protein-related similar to
mec-8 [Caenorhabditis elegans] GI:1370048
Length = 81
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Frame = +3
Query: 345 AFVIFKEISSATVALRSMQGFPFYD----KPMRIQYSK 446
AFV F+++S ++ AL ++QG Y + +R+QY++
Sbjct: 34 AFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQYAR 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,741,546
Number of Sequences: 28952
Number of extensions: 204503
Number of successful extensions: 427
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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