Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i17
         (513 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4FH06 Cluster: NADH-ubiquinone oxidoreductase chain 4L...    38   0.10 

>UniRef50_Q4FH06 Cluster: NADH-ubiquinone oxidoreductase chain 4L;
           n=3; Obtectomera|Rep: NADH-ubiquinone oxidoreductase
           chain 4L - Samia cynthia ricini (Indian eri silkmoth)
          Length = 96

 Score = 38.3 bits (85), Expect = 0.10
 Identities = 24/78 (30%), Positives = 29/78 (37%)
 Frame = +1

Query: 46  VGNLIFVSKNKHXXXXXXXXXXXXXXXXXXXXXXXMVIDYXIYILIVFLVFSXXEXXXXX 225
           +GN IFVSKNKH                         I+Y  Y+ +VFLVF+  E     
Sbjct: 16  IGNWIFVSKNKHWWIVWWSWEFIVWSIFFIWWWYWSWIEYDWYMWMVFLVFTVCEGARGW 75

Query: 226 XXXXXXXXXXXNDYFXRF 279
                      NDYF  F
Sbjct: 76  SIWVSMIRTHGNDYFQSF 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,605,576
Number of Sequences: 1657284
Number of extensions: 1148324
Number of successful extensions: 2644
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2641
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)