Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i16
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0124 + 12526572-12526689,12528205-12528392                       67   1e-11
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96...    27   7.3  

>09_03_0124 + 12526572-12526689,12528205-12528392
          Length = 101

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 33/66 (50%), Positives = 45/66 (68%)
 Frame = +2

Query: 269 RKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRILAQGLTIAALVIGVVIT 448
           +K  +NPFVP+G L TAG L+ GL SFR G ++L Q++MR R++AQG T+ AL+IG    
Sbjct: 29  KKPVKNPFVPIGALVTAGVLTAGLISFRYGNSKLGQKLMRARVVAQGATV-ALMIGSAYY 87

Query: 449 TGKSSK 466
            G   K
Sbjct: 88  YGDQIK 93


>07_01_0129 -
           959600-959625,960100-961428,961585-961657,962185-962226
          Length = 489

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 421 SNGKPLCKNSHSHHLLRESCLSSSKTPKTH 332
           +N   LC+  +S HLL ++CL S +  + H
Sbjct: 178 NNCPRLCRQPYSMHLLLDNCLFSRQLEREH 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,356
Number of Sequences: 37544
Number of extensions: 230488
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)