Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i16
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)               54   6e-08
SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_16257| Best HMM Match : rve (HMM E-Value=1.1e-13)                   27   7.5  
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)                  27   7.5  

>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 40/70 (57%), Positives = 46/70 (65%)
 Frame = +2

Query: 245  ETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRILAQGLTIAA 424
            ETT+EKF RK  ENPFVP+GC  T  AL  GL SF+ G   + Q MMR R++AQG TI A
Sbjct: 3092 ETTKEKFARKVKENPFVPIGCALTVSALVYGLLSFKRGDVGMQQTMMRARVVAQGSTIVA 3151

Query: 425  LVIGVVITTG 454
            LV G   T G
Sbjct: 3152 LVGGCFATAG 3161



 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +2

Query: 302  GCLATAGALSMGLWSFRTGKTRLSQQMMRVRILAQGLTIAALVIGVVIT 448
            GC ATAGAL  GL SF+ G  ++ QQMMR R+LAQG T+ A++ G+  T
Sbjct: 3155 GCFATAGALVYGLLSFKRGNQKVQQQMMRARVLAQGSTLIAVIGGLGYT 3203


>SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)
          Length = 103

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = +2

Query: 209 QLRKEMGASHHVETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFR-TGKTRLSQQMM 385
           QL +        ET  EK  RK    PF+P+G L T  A+  G+ ++R  G    S+ +M
Sbjct: 9   QLSESWQTREERETETEKLIRKSKAQPFIPIGILGTTAAIVWGVIAYRHRGPMSTSRYIM 68

Query: 386 RVRILAQGLTIAALVIGVVIT 448
           R+R++AQ   + ++++G+ IT
Sbjct: 69  RLRVIAQSCVVGSIMVGMGIT 89


>SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 256 RKIS*KIYRESVCSSRLFSNSWSFIHGSLEF*NWKDKTLSANDESENSCT 405
           R+I  ++ RES C + +   SW+ I  ++   N  D +  A   +  +C+
Sbjct: 31  REIKREVRRESTCLTPIIFCSWTIIQNNVVIRNQSDPSSPATSTTTITCS 80


>SB_16257| Best HMM Match : rve (HMM E-Value=1.1e-13)
          Length = 353

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 200 HWVQLRKEMGASHHVETTREKFHRKFTENPF 292
           HWV++R+     H  +   E FHR   +  F
Sbjct: 265 HWVEVRRAEPGHHRSQAFAESFHRWLAQRLF 295


>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
          Length = 1384

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 451 CGDYYTNN*SSNGKPLCKNSHSHHLLRESCLSSSKTPKTHG 329
           CG+ + ++  S+ KP C N   HH   +S        K HG
Sbjct: 761 CGNRFKHHGGSHSKPYCGNRFKHHGGSDSKSYCGNRFKHHG 801



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 451 CGDYYTNN*SSNGKPLCKNSHSHHLLRESCLSSSKTP 341
           CG+ + ++  S+ KP C N   HH+      + + TP
Sbjct: 809 CGNRFRHHGGSDSKPYCGNRFRHHVTPTLNYTVAATP 845



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 451 CGDYYTNN*SSNGKPLCKNSHSHH 380
           CG+ + ++  S+ KP C N   HH
Sbjct: 665 CGNRFRHHGGSHSKPYCGNRFKHH 688



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 451 CGDYYTNN*SSNGKPLCKNSHSHH 380
           CG+ + ++  S+ KP C N   HH
Sbjct: 729 CGNRFKHHGGSDSKPYCGNRFKHH 752



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 451 CGDYYTNN*SSNGKPLCKNSHSHH 380
           CG+ + ++  S+ KP C N   HH
Sbjct: 745 CGNRFKHHGGSHSKPYCGNRFKHH 768


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,093,020
Number of Sequences: 59808
Number of extensions: 285824
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)