Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i11
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    28   0.088
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           28   0.088
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.6  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 285 NFTTPSNKKIEIMTVSSNYHIEVNPTD 365
           N+T P  K +E+  +  NY+ E N  D
Sbjct: 375 NYTIPKEKHVEVARLIRNYYFESNKID 401


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 285 NFTTPSNKKIEIMTVSSNYHIEVNPTD 365
           N+T P  K +E+  +  NY+ E N  D
Sbjct: 375 NYTIPKEKHVEVARLIRNYYFESNKID 401


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 279 TMNFTTPSNKKIEIMTVSSNYHIEVNP 359
           T+N  + SNK   I+T    +  EV P
Sbjct: 115 TLNIESTSNKMTVILTPPGRFFCEVRP 141


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 428 LMSLSNVFY*IHNNNAIMNSDVGWVNFN 345
           + SLSN    IHNNN   N++    N+N
Sbjct: 82  ISSLSNKT--IHNNNNYNNNNYNNYNYN 107


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 533 CGNLSSHTYC*FYF*SHSSDKITLFDDISTCTH 631
           C  +S  T   FY  S S +K+TL   I    H
Sbjct: 255 CMGISFLTVLTFYLPSDSGEKVTLSISILISLH 287


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 533 CGNLSSHTYC*FYF*SHSSDKITLFDDISTCTH 631
           C  +S  T   FY  S S +K+TL   I    H
Sbjct: 255 CMGISFLTVLTFYLPSDSGEKVTLSISILISLH 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,633
Number of Sequences: 438
Number of extensions: 3471
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)