Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i06
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   4.7  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.7  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.2  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 135 PVLRILILKSSSLGGFFKLYYYIFKPTYIYIFN 233
           PV  ILIL ++ L   F   +Y+  P++  + N
Sbjct: 472 PVCLILILANNELHSPFPAEFYVLLPSFYILLN 504


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 178 PPRLEDFRMRILSTGLFYSAKYVRNKNLTDTFSIDLKTIL 59
           PP+   F    L   ++Y  K    KN + + S+D+K  L
Sbjct: 294 PPQFSTFNDNALRLRIYYKPKSWLPKNSSCSLSVDVKATL 333


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 3    CISMLFILVYYAFTVGEIHKIVLRSIEKVSVRF 101
            C+  +FI+ + +F    +H+++ R + + + RF
Sbjct: 1420 CVISIFIVFWISFIPLTVHELIERGVWRATKRF 1452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,778
Number of Sequences: 5004
Number of extensions: 30499
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)