Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i06
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...    28   4.7  
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527...    28   4.7  

>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -2

Query: 184 KKPPRLEDFRMRILSTGLFYSAKYVRNKNLTDTFSIDLKTI 62
           +KPP+ E F   I  TGL ++  +V +  L  TF++D+ ++
Sbjct: 492 RKPPKYERF---IRPTGLRFTKAHVTHPELKCTFNLDIISV 529


>07_03_0423 +
           18035688-18036572,18036659-18036978,18052618-18052724,
           18053001-18053104,18054129-18054328,18054422-18054522,
           18054695-18054841,18055007-18055166,18055287-18055368,
           18056070-18056336,18056846-18056973,18057513-18057672
          Length = 886

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 42  TVGEIHKIVLRSIEKVSVRFLFLTYLAL*KRPVLRILILKSSSLGGFFKLYY 197
           T+G+  K+V      ++ +  F  Y+ L  +  L +L L +  LGG+F  YY
Sbjct: 757 TMGKNGKVVKTKRLNITNKTGFRAYMFLKYKLPLEVLHLVNPLLGGYFSQYY 808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,084,990
Number of Sequences: 37544
Number of extensions: 137761
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)