Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i06
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016414-6|AAG24022.1|  323|Caenorhabditis elegans Serpentine re...    28   4.2  
Z81536-7|CAB04367.1|  338|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    27   9.8  
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    27   9.8  

>AF016414-6|AAG24022.1|  323|Caenorhabditis elegans Serpentine
           receptor, class h protein211 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 381 FILIITQNLLNLSIFTLNLNYLGVKLNHFFINK 283
           FI IITQ ++  +I  L ++Y G  L+  + N+
Sbjct: 239 FISIITQTIIPFAIIILPISYCGYSLSQEYYNQ 271


>Z81536-7|CAB04367.1|  338|Caenorhabditis elegans Hypothetical
           protein F40D4.9a protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 138 VLRILILKSSSLGGFFKLYYYIFKPTYIYI 227
           +  +++ KS  +  F  + Y++F P Y+Y+
Sbjct: 38  IYTVILSKSEYVANFLIVAYFVFLPFYVYV 67


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 403 ACENLIYFYINYNTKFTKSIYFYIKFKLF 317
           A   +IYF +N N+  +K    Y KFK+F
Sbjct: 270 AVHPIIYFIVNNNSTNSKICSKYSKFKMF 298


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/78 (23%), Positives = 38/78 (48%)
 Frame = +3

Query: 6   ISMLFILVYYAFTVGEIHKIVLRSIEKVSVRFLFLTYLAL*KRPVLRILILKSSSLGGFF 185
           +S +F+ ++Y  T+ ++   + R +     +    T+    +  +L I++    SLG  F
Sbjct: 88  LSSIFLFLWYFETILQVVMGLNRYVIICLQKHKIFTF----RTTILLIVLSIPVSLGFMF 143

Query: 186 KLYYYIFKPTYIYIFNYI 239
           K  Y+    T++Y  NY+
Sbjct: 144 KSQYWNLCCTFVYDHNYL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,992,193
Number of Sequences: 27780
Number of extensions: 157441
Number of successful extensions: 353
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)