Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i04
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   127   1e-30
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    30   0.28 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   1.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   3.4  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   6.0  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   7.9  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  127 bits (307), Expect = 1e-30
 Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 7/138 (5%)
 Frame = +1

Query: 181 PHVPPSAEKRPWKIV-------WRNVILFFILHVGGVYGGYLFLFKAMWRTSIFAIFLYL 339
           P  P   +++PW +        W + +L F L +  +YG  +F      +T IFAI  Y 
Sbjct: 42  PKAPKHIQEQPWTMQNWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYA 99

Query: 340 CSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHRMHHKYSETDAD 519
            SGLGITAG HRLW+H++YKA+ PL   L      AF+ ++  W+RDHR HH+Y++TD D
Sbjct: 100 YSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKD 159

Query: 520 PHNATRGFFFSHIGWLLL 573
           P+N  +GF+++H+GW+++
Sbjct: 160 PYNVKKGFWYAHVGWMII 177


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 180 APCTSLSREETLEDCVEKCDSVLYSACRWCLWRVLVPFQSHVEDFYIRHIFVLVFGI 350
           A  T+ S  ET   C++K + +  S    C +  +VP Q+H  +F +   +V + GI
Sbjct: 100 AGLTNDSNRETFPLCIKKYNKIENSIA--CKYIKIVPLQAHAHEFNMSIWYVALHGI 154


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 231 KCDSVLYSACRWCLWRVLVPFQSHVEDFY 317
           KC   L +  RWCL     P Q+H+++FY
Sbjct: 411 KCCVKLDAKYRWCLSGT--PIQNHIDEFY 437


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 183  PCTSLSREETLEDCVEKCDSVLYSACRWC 269
            PC ++S+  T  +   K  S+L+  CR C
Sbjct: 1407 PCATISKAVTQHNAYNKKLSLLFDICRGC 1435


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 112 QRKQEASWVLYEADANNLPEDAPPHVPPSAEKRPWKI-VWRN 234
           QR+ E+++ L E D     E +    PP + K P  +  W N
Sbjct: 11  QRRDESAYRLGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSN 52


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 280 YLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLW 381
           Y   FKA     IF  FL++  G+G+  G + +W
Sbjct: 891 YWTYFKACSLFLIFLYFLFIIGGIGMNVGTN-VW 923


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,374
Number of Sequences: 5004
Number of extensions: 67555
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)