Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10i04
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 33 0.16
11_01_0535 + 4234282-4235082 30 1.1
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 29 2.0
10_08_0445 + 17989438-17990895 29 2.0
03_02_0851 - 11778658-11778747,11778826-11778884,11779026-117790... 29 2.0
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 29 2.7
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 29 2.7
11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33... 29 3.5
07_03_0765 - 21341872-21342198,21342482-21342635,21342716-213429... 28 4.6
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562... 28 4.6
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411... 28 4.6
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 106 PPQRKQEASWVLYEADAN---NLPEDAPPHVPPSAEKRPWKIVWRNVILFFILHVGGVYG 276
PP++K+ V+ AD ++ A P PP PW+ W +V + +L VGG+
Sbjct: 154 PPKKKKVV--VVESADLETHESVGTAASPPPPPPVALTPWEKFWISVAV--VLGVGGLVF 209
Query: 277 GYLFLFK 297
G +FL K
Sbjct: 210 GLIFLIK 216
>11_01_0535 + 4234282-4235082
Length = 266
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 304 WRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLP 411
W + +A FLY C LG A RLW + + P
Sbjct: 220 WTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYP 255
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 324 HIFVLVFGIGYHSWRAQT-LGTQVL*SSAATENITHHIQYYRFSGCRSG 467
H+F F Y+ W + + G ++ A ENI + QY RF G ++G
Sbjct: 57 HLFESGFMPSYNCWTSHSEQGVEMEEDEAQDENIPNWAQYARFEGNQTG 105
>10_08_0445 + 17989438-17990895
Length = 485
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +1
Query: 148 ADANNL-PEDAPPHV--PPSAEKRPWK 219
A A N+ P +PPHV PP+ +RPW+
Sbjct: 407 ATATNMTPPPSPPHVRAPPAPARRPWR 433
>03_02_0851 -
11778658-11778747,11778826-11778884,11779026-11779090,
11779223-11779359,11779616-11779668,11779955-11779980,
11780540-11780595
Length = 161
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -3
Query: 247 RTESHFSTQSSKVSSLLREVHGAVHLLAGYWRRLRTIPTKPPVSFGEAFSLIQNIFKYCK 68
R ++ + ++ SL+ ++ A G RLRTIPT+ + + + + K +
Sbjct: 85 RGQTDLRSTGKQIRSLIGSIYKAESTATGLMDRLRTIPTRQSLELRAEVASMASDLKNQR 144
Query: 67 CVV 59
CV+
Sbjct: 145 CVL 147
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 246 LYSACRWCLWRVLVPFQSHVEDFYIRHIFVLVFGIGYHSW 365
L S CRWCL P Q+++ED + F+ V G SW
Sbjct: 695 LTSHCRWCL--TGTPLQNNLEDLFSLLCFLHVEPWGDASW 732
>01_06_0430 + 29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 309 PPHGFEKEQVPSINTTDMQNKEQNHISPHNLPR 211
PP G K Q +NT + KE+N SP P+
Sbjct: 1035 PPLGKGKSQEADLNTVSVTGKEENTESPAETPK 1067
>11_01_0043 +
328272-328753,329233-329298,330082-330253,330357-330565,
330779-330937,331279-331627
Length = 478
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 408 QPSFIGLVCPKSV-RASCDTQSRTQVQKYGEYRSPPHGFEKEQVPSINTTDMQNK 247
+P + GL C +CD R KY +R PHG +VP N + K
Sbjct: 120 RPLYSGLKCSFIFDEVACDKYGRNDT-KYQHWRWQPHGCNLPRVPGANWKTYREK 173
>07_03_0765 -
21341872-21342198,21342482-21342635,21342716-21342953,
21343072-21343282,21343475-21343611,21347267-21348179
Length = 659
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = -1
Query: 396 IGLVCPKSVRASCDTQSRTQVQKYGEYRSPPHGFEKEQVPSINTTDMQNKEQNHISPHN 220
IGL+C + A S V G R P I + N EQN + PHN
Sbjct: 584 IGLLCVQPKPADRPLMSAVNVMLTGTIRLPSLSRPAFWFQEIGASSDVNSEQNLLDPHN 642
>03_02_0101 -
5623661-5623669,5623756-5624408,5624504-5624640,
5626032-5626609
Length = 458
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 265 GVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAH 372
G GY L+ +W T + A+ L + LG+ G H
Sbjct: 97 GAAAGYQLLWLLLWATVMGALVQLLSARLGVATGKH 132
>02_05_0441 +
29040250-29040524,29040656-29040772,29040834-29041143,
29041863-29042018,29042332-29042483,29042783-29042936,
29043897-29043998,29044168-29044209
Length = 435
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 193 PSAEKRPWKIVWRNVILFFILHVGGVYGG-YLFLFKAMWRTSIFA 324
PS + P + WR ++ FFIL + G++ LFLF + +A
Sbjct: 70 PSQARTP--LTWRLLVSFFILGLTGIFANQLLFLFGLSYTNPTYA 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,729,800
Number of Sequences: 37544
Number of extensions: 480100
Number of successful extensions: 1426
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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