Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i04
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              135   3e-32
SB_21899| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)             28   6.3  
SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)                     27   8.3  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  135 bits (326), Expect = 3e-32
 Identities = 52/82 (63%), Positives = 70/82 (85%)
 Frame = +1

Query: 331 LYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHRMHHKYSET 510
           L LC G G+T GAHRLWAH+++KA+ PLR+++ + N++A Q+ + +W+RDHR+HHKYSET
Sbjct: 12  LSLCRGYGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSET 71

Query: 511 DADPHNATRGFFFSHIGWLLLR 576
           DADPHNA RGFFFSH+GWL+ R
Sbjct: 72  DADPHNAKRGFFFSHVGWLMQR 93


>SB_21899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 289 GTSTLHKHHRHAE*RTESHFSTQSSKVSSLLREVHGAVHLLAGYWRRLRTIPTK 128
           G S  H+  RHA  RT+    TQ ++  +++R    A+H   G +RR R   T+
Sbjct: 166 GRSGAHRRKRHA--RTQGCVQTQKARTDAVMRIDAKAMHGRRGAYRRKRHARTQ 217


>SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 363 SCDTQSRTQVQKYGEYRSPPHGFEKEQVPSINTTDMQNKE 244
           SC   + T  Q + +Y+  P   +KE  P  +  D  NKE
Sbjct: 68  SCKGPTNTWSQAHYQYKGVPELLQKEPTPPKSGPDQNNKE 107


>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
          Length = 350

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 313 SIFAIFLYLCSGLGITAGAHRLWAHKSY 396
           ++F I +     LG+++  H  WAHK+Y
Sbjct: 148 AVFVIIVAWALALGVSSLIHVTWAHKAY 175


>SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)
          Length = 450

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 175 APPHVPPSAEKRPWKIV 225
           +PPH PP A +RPW IV
Sbjct: 360 SPPH-PPPALRRPWAIV 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,577,115
Number of Sequences: 59808
Number of extensions: 545175
Number of successful extensions: 1494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)