Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i04
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   3.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   3.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   3.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   6.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 244  TESHFSTQSSKVSSLLREVHGAVHLLAGYWRRLRTIPTKPPVSFGEAF 101
            +E H    S  + S +   +  +   A  WR+ +  P  PP S G+A+
Sbjct: 1323 SEDHRRPLSEHIYSSIDSDYSTLERTA--WRQQQPPPPPPPPSSGQAY 1368


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 157 NNLPEDAPPHVPPSAEKRPWKIVWRNVILFFI 252
           N+ PE+  P  P    +R   +++ ++  FFI
Sbjct: 176 NDWPEELEPGTPCQLTRRQGYVIYSSLGSFFI 207


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 157 NNLPEDAPPHVPPSAEKRPWKIVWRNVILFFI 252
           N+ PE+  P  P    +R   +++ ++  FFI
Sbjct: 176 NDWPEELEPGTPCQLTRRQGYVIYSSLGSFFI 207


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 151 DANNLPEDAPPHVPPSA 201
           D++  P+ APP  PPS+
Sbjct: 334 DSDTPPKPAPPPPPPSS 350


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 157 NNLPEDAPPHVPPSAEKRPWKIVWRNVILFFI 252
           N+ PE+  P  P    +R   +++ ++  FFI
Sbjct: 176 NDWPEELEPGTPCQLTRRQGYVIYSSLGSFFI 207


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 526 CGGPHRSLNIC 494
           CGGP   L IC
Sbjct: 69  CGGPQNYLGIC 79


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 276 SINTTDMQNKEQNHISPHNLPRSLLC 199
           S   T  ++KEQ H  P N     LC
Sbjct: 382 STKLTLKRHKEQQHFQPLNSAVCALC 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,559
Number of Sequences: 438
Number of extensions: 5502
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)