Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i03
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           48   2e-06
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_58998| Best HMM Match : PkinA_anch (HMM E-Value=1.8)                26   8.1  
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                26   8.1  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +2

Query: 248 KVHGSLARAGKVKGQTPKVEKQQKK 322
           KVHGSLARAGKVK QTPKV+ Q+KK
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKK 26


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 177 KGAPHNDRVRSSSPTAARVRMRS 109
           +G+PH  R R+SSP  AR R  S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751


>SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 14  WLIRFYNMQLHIRGQSTHVLDVNGQESIGQIKERIR 121
           W I  Y  + H+RG+  H  +V GQ+   + KE +R
Sbjct: 9   WGINTYRHKEHVRGRDRHKENVRGQD---RHKEHVR 41


>SB_58998| Best HMM Match : PkinA_anch (HMM E-Value=1.8)
          Length = 301

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 45  ISEGNRHTSWTSMARSPLVRSRN 113
           IS+G RH  W S A   L+R R+
Sbjct: 237 ISKGKRHLPWVSPAIKRLMRKRD 259


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 24  DFTICSCISEGNRHTSWTSMARSPLVRSRNAFVLL 128
           D  +C C +  N  +S  S+  SP V  + A VLL
Sbjct: 688 DLKLCVCSARSNHTSSRISVNYSPNVIGKEAVVLL 722


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,549,774
Number of Sequences: 59808
Number of extensions: 160862
Number of successful extensions: 413
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)