Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i03
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   8.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    20   8.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 40  VAYQRAIDTRPGRQWPG 90
           VA        PGR WPG
Sbjct: 906 VARSNVTPRSPGRAWPG 922


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 264 KDPCTLPPS 238
           K PCT PPS
Sbjct: 311 KMPCTQPPS 319


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 143 HRQLQQEYECV 111
           H + Q+EY CV
Sbjct: 29  HAERQEEYRCV 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,789
Number of Sequences: 438
Number of extensions: 1221
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)