Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10i02
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    33   0.042
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    31   0.096
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    31   0.17 
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    29   0.51 
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    29   0.51 
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    29   0.51 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   0.89 
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    28   1.2  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    28   1.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    28   1.2  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.6  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   4.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   4.8  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   4.8  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   8.3  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    25   8.3  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.3  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
 Frame = +2

Query: 221 LKKYSRFKSKCLVAQSLFYKILKSGKKVNIESVKSLDKHYLKKSL-TIYTETDVTPTDLF 397
           L+K      K L    L  K   +  K + E+     K+Y+KKSL  I   T++ P   +
Sbjct: 87  LRKDKNISVKDLDEFHLLDKPAANNTKADAEACLLKSKNYIKKSLQEIVYLTNMQPNVSW 146

Query: 398 H-NDSPTEYLDIPADDNIIIEN-----EDSLEINETNSEDYCNIEYLSDEDYSDL-QSQL 556
           +    PT  + +P + N   +N     E S      N  ++  +EY  +E+ + L  S+L
Sbjct: 147 NVLQEPTRGIKVPKESNNTQQNNQFVMEPSQNKGNVNDANFFEVEYARNENMNKLSSSEL 206

Query: 557 DSKEL 571
            S +L
Sbjct: 207 ISDDL 211


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 31.5 bits (68), Expect = 0.096
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = +2

Query: 311 ESVKSLDKHYLK-KSLTIYTETDVTPTDLFHNDSPTEYLDIPADDNIIIENEDSLEINET 487
           ES  S+ ++Y++  S+  + + +  P ++   + PT  ++   DDN IIE +   E  E 
Sbjct: 38  ESKGSITENYVQDSSVDEHDDGNWQPMEVISLE-PTHLINDIDDDNEIIEEKKETEKVEE 96

Query: 488 NSEDYCNIEYLSDEDYSDLQSQLDSKELSLVHLQE 592
           +  +        DED  D + QLDS+ + L+ + +
Sbjct: 97  SELEPRYTRVFRDED-DDQKHQLDSEAIKLLDIAD 130


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 30/101 (29%), Positives = 50/101 (49%)
 Frame = +2

Query: 260 AQSLFYKILKSGKKVNIESVKSLDKHYLKKSLTIYTETDVTPTDLFHNDSPTEYLDIPAD 439
           A +L    L S K ++I S+  L  ++ KK L+I +E  + P ++ HN S      I   
Sbjct: 99  AINLLLSSLSSLKWISIGSI--LLPYFKKKELSI-SEHKINPNNVIHNSS-----RILGQ 150

Query: 440 DNIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQLDS 562
             + +  E + +IN  + E+YC +  L  + Y DL  Q +S
Sbjct: 151 YTLQVLPEGTAKINPLH-ENYC-LNSLRKDQYVDLAIQFNS 189


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 149 DIVEVNPECSPDLPQCVCYLCAGLLKKYSRFKSKCLVAQSLFYKILKSGK-KVNIESVKS 325
           +++  +PECS  L +    L   L + + + + K   A      +L SGK K++ +  K 
Sbjct: 789 NMITADPECSESLTRAALGLLGDLAESFPKGELKSYFAADWVAALLNSGKTKISSQQTKD 848

Query: 326 L 328
           L
Sbjct: 849 L 849


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +2

Query: 305 NIESVKSLDKHYLKKSLTIYTETDVTPTDLFHNDSPTEYLDIPADDNIIIENEDS 469
           N  S+K    H   K  +IYT  ++   D  H D    YL+   DD  I +  DS
Sbjct: 90  NTYSLKPKKPHTTPKPASIYTFNELVVLDYPHKDRALRYLERLRDDTGIKKIMDS 144


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +2

Query: 302 VNIESVKSLDKHYLKKSLTIYTETDVTPTDLFHNDSPTEYLDIPADDNIIIENEDSLEIN 481
           +N+++V  +    + KS+T  T  +   T+   NDSP+         N I+ NED   +N
Sbjct: 257 LNLKTVLFISHLDILKSITKQTYYENYRTEKLSNDSPSNTSLSLQKQNSIVANEDKRSVN 316

Query: 482 -ETNSEDYCNIEYLSDEDYSDLQSQLDSKELSLVH 583
               +E   +I+    E  +++     S+EL  ++
Sbjct: 317 GSERTETRSSID--QSEMRTNVSDSTKSEELKKIN 349


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 407 SPTEYLDIPADDNIIIENEDSLEINET-NSEDYCNIEYLSDED-YSDLQSQLDS 562
           SP    ++ +D NI I NE++ E + T  +E     E   DED  SD QS + S
Sbjct: 71  SPDNEANLLSDQNITISNENNNENDTTEEAETSSGNEAADDEDSSSDAQSSVPS 124


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +2

Query: 302 VNIESVKSLDKHYLKKSLTIYTE--TDVTPTD-LFHNDSPTEYLDIPADDNIIIENEDSL 472
           V  E  K L K  +  S T        V+ +D  F ND  ++   +PA  NI + +++SL
Sbjct: 444 VTNEDAKQLKKSVIGSSWTTVNNDWNSVSKSDQTFENDGASKV--VPAG-NITLNSDNSL 500

Query: 473 EINETNSEDYCNIEYLSD 526
             + + SED  +   LSD
Sbjct: 501 HHSISESEDLSSASTLSD 518


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 101 VKMYSLKFYPLETYYEDIVEVNPECSPDLPQCVCYLCAGLL----KKYSRFKSKC 253
           V+ ++LKFYP +  Y     +N  C  D        CA LL    +++SR  +KC
Sbjct: 444 VEQFTLKFYPPQVQYWARAIMNNYCRKDESHGGIRRCANLLCNKWEEHSRQFAKC 498


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 407 SPTEYLDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQLDSKELS 574
           S T +  +   D  +  N  +   NE N+EDY ++  L   +  D+     SKELS
Sbjct: 349 SLTSFKQVNVTDASLSPNSHNTSDNEQNNEDYVSVSSLVGSETEDITY---SKELS 401


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +2

Query: 311 ESVKSLDKHYLKK---SLTIYTETDVT--PTDLFHNDSP 412
           E + +L +HYLKK   SL I  E +    PT+L H  SP
Sbjct: 7   EEIDALKRHYLKKELFSLLIADELNFVSEPTNLDHLGSP 45


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +2

Query: 404 DSPTEYLDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQLDSKELSLV 580
           DSP         +N+ + +E +    +   ++  N   +SD++  +L+S    KEL+ V
Sbjct: 34  DSPQNDELAEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQELESPQGPKELTAV 92


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 254 LVAQSLFYKILKSGKKVNIESVKSLDKHYLKKSLTIYTETDVTPTDLFHNDSP 412
           L  +SL  K   +  K++ + V + D+H+L  S  +YT  D     +     P
Sbjct: 690 LSTESLLIKFYTNQNKISAD-VTASDRHFLLPSNRLYTYNDKQLESILRGSQP 741


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 368 ETDVTPTDLFHNDSPTEYLDIPADDNIIIENED 466
           E D T T     D  TEY ++  DD    E+ED
Sbjct: 59  EEDTTLTSSQFEDCGTEYNEVVEDDEFRSEDED 91


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 128 PLETYYEDIVEVNPECSPDLPQCVCYLCAGLLKKY 232
           P+ + + D+  ++ +   +LP  V YLC   L +Y
Sbjct: 207 PIRSQWNDLFAIHTKGFLNLPSGVWYLCFNTLAQY 241


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 57  LWGAIQSVGSVWNLMLKCTV*SFIHWRPIMKIS*KLTPNVLQIYH 191
           L G++ + G+V   ML CT  S +  +  M++S    PN+ QI H
Sbjct: 97  LRGSVDNDGAV-QAMLNCTWNSNVLSKVQMQLSNGAVPNMCQIEH 140


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
 Frame = +2

Query: 290 SGKKVNI-ESVKSLDKHYLKKS-----LTIYT---ETDVTPTDLFHNDSPTEYLDIPADD 442
           SG K N  E   S+D   LKK+     LT Y    E +V  TD+  +++    LD+    
Sbjct: 11  SGSKTNAAEGQNSIDGLSLKKTTSPFILTAYPSNEEKEVKETDIVPDENKVNELDVHKQS 70

Query: 443 NIIIENEDSLEINETN 490
               + E +   ++TN
Sbjct: 71  TEFSKQESASNDDDTN 86


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 428 IPADDNIIIE-NEDSLEINETNSEDYCNIEYLSDEDYSDLQSQLDSKELSL 577
           IP+  + + + N ++L  ++T S  Y N + ++  D+    + LDS+  +L
Sbjct: 79  IPSPSSFLSDHNNNNLFSDDTISRQYSNTDDINPSDFGGQCAILDSQNFTL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,168
Number of Sequences: 5004
Number of extensions: 45396
Number of successful extensions: 171
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)