Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10i02
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0065 - 558521-558675,558765-558835,558914-558998,559366-55... 33 0.17
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 33 0.23
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 32 0.30
04_03_0086 - 10939951-10939956,10951819-10952340,10952425-109526... 31 0.69
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 31 0.92
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 29 2.8
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719... 28 4.9
06_03_0513 - 21635040-21635549,21635724-21635840,21635970-216362... 28 6.5
03_02_0715 + 10621789-10623243,10624074-10625018 28 6.5
03_02_0245 + 6754381-6754506,6756099-6756188,6756806-6756921,675... 28 6.5
>12_01_0065 -
558521-558675,558765-558835,558914-558998,559366-559484,
559570-559718,560116-560157,560413-560484,560788-560897,
561446-561535,561633-561747
Length = 335
Score = 33.1 bits (72), Expect = 0.17
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 359 IYTETDVTPTDLFHNDSPTEY--LDIPADDNIIIENEDSLEINETNSED---YCNIEYLS 523
IYT T+V S Y L + DD++ +++D +++N+ED Y E LS
Sbjct: 239 IYTVTEVDDDTTMEGTSSAPYPLLQVDNDDDVCYDDDDPYGTDDSNAEDNPLYDYPEELS 298
Query: 524 DEDYSDLQSQLDSKEL 571
+++ D S+ EL
Sbjct: 299 EDEDDDSNSENPFSEL 314
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +2
Query: 404 DSPTEYLDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDED--YSDL-QSQLDSK 565
+SP ++L++ +NI +E+E +E+ N +E+L ED ++L Q+ LD K
Sbjct: 1322 ESPVKHLNLETGENIKLEDEKEMEVGHLNKSRGNEMEFLVKEDAKITELAQTNLDIK 1378
>05_07_0332 -
29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = +2
Query: 131 LETYYEDIVEVNPECSPDLPQCVCYLCAGLLKKYSRFKSKCLVAQSLFYKILKSGKKVNI 310
++ Y +E N + S L L + K L SLFY + S KV
Sbjct: 749 IQDYAVKFLEYNSQTSGSLVLAEAPPTPDRLNDFGTLKVSDLSEGSLFYTVAPSAMKVYR 808
Query: 311 ESVKSLDKHYLK 346
ESV+SL H+ K
Sbjct: 809 ESVESLSVHHKK 820
>04_03_0086 -
10939951-10939956,10951819-10952340,10952425-10952664,
10952932-10952988
Length = 274
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 167 PECSPDLPQCVCYL-----CAGLLKKYSRFKSKCLVAQSLFYKILKSGKKVNIESVKSLD 331
PE +P + VC + C GL + + F C A+SLF + L + +++ LD
Sbjct: 58 PEIAPFV-DAVCQIVAPSNCLGLFTELNEFSESCAAAESLFVRGLAAHLSTKRSALERLD 116
Query: 332 KHYLK 346
++ L+
Sbjct: 117 RYRLR 121
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 30.7 bits (66), Expect = 0.92
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 299 FYQT-LVFYKIRIVQLSIYF*ICYTFSIILHKDNIHTVVDLENIRG*LLRYLHNRSPMD 126
FY + ++ YK + +LS+ F S I+ +DN + E +G L LH R MD
Sbjct: 411 FYSSDILLYKYELTKLSVRFVPNLAISRIIRRDNNKVRILQEGCKGLLYMVLHARVVMD 469
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +2
Query: 299 KVNIESVKSLDKHYLKKSLTIYTETDVTPTDLFHNDSPTEYLDIPADDNIIIEN-EDSLE 475
K+N ES S + + + T + + + + +YL +P+DD + E +DS
Sbjct: 263 KINEESNPSNSEVVEQMTNGESTSNNASCIVIDEEQTKAKYLPVPSDDKVSDEKPDDSSV 322
Query: 476 INETNSEDYCNIEYLSDEDYSD 541
+NE +D E D+ SD
Sbjct: 323 LNEKIEDDETLAEKAEDDKTSD 344
>12_01_0788 +
7192937-7192994,7193074-7193160,7193242-7193307,
7193447-7193555,7194522-7194785,7194919-7195006,
7195085-7195708,7196017-7196140,7196195-7196337,
7196434-7196649,7196781-7196873,7196952-7197032,
7197120-7197504,7197599-7197636
Length = 791
Score = 28.3 bits (60), Expect = 4.9
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Frame = +2
Query: 152 IVEVNPECSPDLPQCVCYLCAGLLKKYSRFKSKCLVAQSLFY-KILKSGKKVNIESVKSL 328
++++ + S + C+ L G KK ++ S C++ F K + G+K V +
Sbjct: 225 VIDLRKDGSSQVSDCLYALAIGPYKKLHKY-SGCIIGGVRFLTKEREEGRKTQNSGV-CV 282
Query: 329 DKHYLKKSLTIY-TETDVTPTDLFHNDSPT-----EYLDIPADDNIIIENEDSLEIN 481
+ + K +T Y T TD+ D + ND ++ D+ + +II+N D + IN
Sbjct: 283 EGPHKGKIITYYGTLTDIYVLD-YPNDRQVAFFMCDWYDLERNKPVIIDN-DFVSIN 337
>06_03_0513 -
21635040-21635549,21635724-21635840,21635970-21636224,
21636429-21636569,21636672-21636830,21637148-21637153
Length = 395
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 293 GKKVNIESVKSLD--KHYLKKSLTIYTETDVTPTDLFHNDSPTEYLDIPADDNIII 454
GK V E + L L ++L +++ V PT H+D+ D+PA ++I
Sbjct: 239 GKAVTEEDLPRLPYLDAVLHETLRLHSPVPVLPTRFVHDDTTLAGYDVPAGTQVMI 294
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 194 CVCYLCAGLLKKYSRFKSKCLVAQSLFYKILKSGKK 301
C Y C + ++S+ +S+C + + F I KS K+
Sbjct: 432 CSHYFCFACIMQWSKVESRCPLCKRRFTTITKSSKE 467
>03_02_0245 +
6754381-6754506,6756099-6756188,6756806-6756921,
6757027-6757435
Length = 246
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 443 NIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQL 556
NII E + S+ INE SE ++ LSD Y D+ S++
Sbjct: 78 NIIAEVKQSVVINEDGSEK-LKLKDLSDAIYQDIGSKI 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,609,870
Number of Sequences: 37544
Number of extensions: 222997
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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