Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10i02
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 36 0.019
SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 31 0.70
SB_23601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36) 31 0.93
SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9) 30 1.2
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09) 30 1.6
SB_42375| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2) 29 2.1
SB_1740| Best HMM Match : Protamine_P2 (HMM E-Value=0.9) 29 3.7
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_14573| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23) 27 8.6
SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7) 27 8.6
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4) 27 8.6
SB_19847| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 36.3 bits (80), Expect = 0.019
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +2
Query: 287 KSGKKVN--IESVKSLDKHYLKKSLTIYTETDVT-PTDLFHNDSPTEYLDIPADDNIIIE 457
K+G+ V I K+++ H L + +E D+T D+ D T DI ++D+I E
Sbjct: 40 KTGRDVRRQIHEAKNVEGHSLAPCRKLTSEDDITSEDDITSEDDITTEDDITSEDDITSE 99
Query: 458 NEDSLEINETNSEDYCNIEYLSDED 532
++ + E N T+ +D + + ++ +D
Sbjct: 100 DDITSEDNITSEDDITSDDDITSDD 124
>SB_34347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 31.9 bits (69), Expect = 0.40
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +2
Query: 281 ILKSGKKVNIESVKSLDKHYLKKSLTIYTETDVTPTDLFHNDSPTEYLDIPADDNIIIEN 460
I++SG K ++ +KSLD + + +S+ I+T T+ D+ S T+ IE
Sbjct: 261 IVRSGTKETLQYLKSLDDNVVYESVFIHTGTN----DIRGYTSITQ-----------IEE 305
Query: 461 EDSLEINETNSEDYCNIEYLSDEDYSDLQSQ---LDSKELSLVHLQE 592
L I E N + Y Y S E+ SD Q+Q LD E+ L+ +
Sbjct: 306 NIDLIIQEVNKDVYIATVYFSPEN-SDRQTQSDYLDDLEVELLKFSQ 351
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 31.1 bits (67), Expect = 0.70
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Frame = +2
Query: 239 FKSKCLVAQSLFYKILKSGKKVNIESVKSLDKHY--LKKSLTIYTETDVTPTDLFHNDSP 412
FK K L + K+ K ++K DK L+ SL+ T D D
Sbjct: 123 FKEKQLRETESRLEDFKNEVKKLQHTIKLKDKKIDGLESSLSETENTSFVQKD----DRV 178
Query: 413 TEY-LDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQLDSKE 568
TE+ + A DN I+E E+ LE E+ + + E SDL+ Q+D E
Sbjct: 179 TEFKCTLEARDNRIVELENKLEDLESPNNKLHHSPQFQGEKISDLEGQIDELE 231
>SB_23601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 31.1 bits (67), Expect = 0.70
Identities = 27/113 (23%), Positives = 52/113 (46%)
Frame = +2
Query: 218 LLKKYSRFKSKCLVAQSLFYKILKSGKKVNIESVKSLDKHYLKKSLTIYTETDVTPTDLF 397
L+K SR+K K L+A L ++ +N ES + + K+ + +D+ T
Sbjct: 31 LVKGKSRYKMKVLIALFLLALVVS----INCESETAPAQDVSDKTSPVADTSDIGGTT-- 84
Query: 398 HNDSPTEYLDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQL 556
D P DD+ I +++D ++ E+++ N E +DE D +++
Sbjct: 85 DEDEPM------TDDDDIPDDDDDTQLEESDNAGVANTETGNDEPAQDANAKI 131
>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2337
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 398 HNDSPTEYLDIPADDNIIIENEDSLEINET--NSEDYCNIEYLSDEDYSDLQ 547
HN TEY+D P + N DS+E+N+ + D+ + Y E + +L+
Sbjct: 702 HNPQRTEYVDNP-QAYFALLNNDSIEVNDVLIVNGDFIQVHYRLGEKFQELK 752
>SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 933
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 362 YTETDVTPTDLFHNDSPTEYLD--IPADDNIIIENEDSLEINETNSED 499
Y+E PT +FH++ P EYL+ + +N++I + ++ ++E D
Sbjct: 676 YSEAHRVPTSVFHSEFP-EYLESLLLCKENLLITGDFNIHVDEPKDPD 722
>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
Length = 979
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 362 YTETDVTPTDLFHNDSPTEYLD--IPADDNIIIENEDSLEINETNSED 499
Y+E PT +FH++ P EYL+ + +N++I + ++ ++E D
Sbjct: 277 YSEAHRVPTSVFHSEFP-EYLESLLLCKENLLITGDFNIHVDEPKDPD 323
>SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9)
Length = 813
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +2
Query: 374 DVTPTDLFHNDSPTE----YLDIPADDNIII---ENEDSLEINETNSEDYCNIEYLSDED 532
D + DL H +E +L ++D+++ E+ED L + +E ++ +L DE
Sbjct: 174 DESEDDLVHLKDESEDDLVHLKDESEDDLVHLKDESEDDLVHLKDENESEDDLVHLKDES 233
Query: 533 YSDLQSQLDSKELSLVHLQE 592
DL D E LVHL++
Sbjct: 234 EDDLVHLKDESEDGLVHLKD 253
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 455 ENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQLDSKELSLVHLQE 592
E+ED L + +E ++ +L DE DL D E LVHL++
Sbjct: 425 ESEDDLVHLKDENESEDDLVHLKDESEDDLVHLKDESEDDLVHLRD 470
>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
Length = 702
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Frame = +2
Query: 290 SGKKVNIESVKSLDKHYLKKSLTIYTETDV--TPTDLFHNDSPTEYLDIPADDNIIIENE 463
S K+ + S+K D L K L Y D + N++P P + +
Sbjct: 261 SPKQDALSSIKEKDIDNLSKELESYRRLDYAGSKAQAQINNTPCNAFATPQETAGSTSAQ 320
Query: 464 DSLEINETNSEDYCNIEYLSDEDYSDLQSQLDSKELSL 577
++ ++E+ C++ L+DE + + DS L+L
Sbjct: 321 AQTDVTTAHAEETCSVHELADEGKTRTEGLDDSSFLAL 358
>SB_42375| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2)
Length = 475
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 386 TDLFHNDSPTEYLDIPADDNIIIENE----DSLEINETNSEDYCNIEYLSDEDYSDLQSQ 553
+DL N+ P D+P ++ ENE D ++N S+D ++ D+D +DL +
Sbjct: 226 SDLDRNEPPD---DLPHEECKSYENEGKENDKYDLNLKKSDDKADLNLKKDDDKADLNLK 282
Query: 554 LDSKELSL 577
D + L
Sbjct: 283 KDDDKADL 290
>SB_1740| Best HMM Match : Protamine_P2 (HMM E-Value=0.9)
Length = 268
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +2
Query: 368 ETDVTPTDLFHNDSPTEYLDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDEDYS--D 541
ETD +P S + L +P D+N + +E +E +E++ +E ED D
Sbjct: 37 ETDPSPEKANEPKSDVDDLHLPNDENEMDNDESDESEDEAETEEFGALEKAGKEDKEVYD 96
Query: 542 LQSQLDSKEL 571
L D E+
Sbjct: 97 LDLPDDENEM 106
>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 293 GKKVNIESVKSLDKHYLKKSLTIYTETDVTPTDLFHNDSPTEYLDIPADDNIIIENEDSL 472
G +N + + ++ K + KK Y + D T + ND Y D DD+ ++D
Sbjct: 989 GFLINKQVIANITKKWYKK----YNDDDGTDDGNYDNDD--NYNDDDIDDDNNDNDDDDY 1042
Query: 473 EIN---ETNSEDYCNIEYLSDEDYSD 541
+N + N++DY + D+D D
Sbjct: 1043 VVNYCKDDNADDYDGVGDDDDDDDDD 1068
>SB_14573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 395 FHNDSPTEYLDIPADDNIIIENEDSLEINETNSE 496
FH D + + +P D+ I+EN ++L++ T+++
Sbjct: 60 FHEDETDKIITVPILDDNIVENTETLKVVLTSND 93
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 395 FHNDSPTEYLDIPADDNIIIENEDSLEINETNSE 496
FH D + + +P D+ I+EN ++L++ T+++
Sbjct: 3251 FHEDETDKIITVPILDDNIVENTETLKVVLTSND 3284
>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/54 (18%), Positives = 31/54 (57%)
Frame = +2
Query: 401 NDSPTEYLDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQLDS 562
N+S + L++ D ++ D ++ ++ ++ED ++E +++ SD + +++
Sbjct: 764 NESLKQALEVDMIDAEVLSEADDVQEDQEDNEDEVDVEEQEEDNASDYEDNIEN 817
>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
Length = 553
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/70 (20%), Positives = 34/70 (48%)
Frame = +2
Query: 368 ETDVTPTDLFHNDSPTEYLDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQ 547
+ + + ++ ND+ I +DN I +N++S+ N+ + D N +D +D
Sbjct: 429 DNSIYDSSIYDNDNSIYDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDND 488
Query: 548 SQLDSKELSL 577
+ ++ + S+
Sbjct: 489 NSINDNDNSI 498
>SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)
Length = 152
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +2
Query: 74 VCRICLEFN----VKMYSLKFYPLETYYEDIVEVNPE 172
V RICL+F V+ S P ET + D++EV PE
Sbjct: 100 VSRICLDFPNYVMVRAASGPESPFETAFNDLIEVIPE 136
>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
Length = 443
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +2
Query: 431 PADDNIIIENEDSLEINETNS 493
P DD++ ++NED L+I++ +S
Sbjct: 423 PLDDDVFLDNEDELDIDKWSS 443
>SB_19847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 389 DLFHNDSPTEYLDIPADDNIIIENEDSLEINETNSEDYCNIEYLSDEDYSDLQSQL 556
D +++D +Y D DDN E+ED + EDY +DY+DL +L
Sbjct: 11 DAYYDDD-RQYEDEDYDDNRTCEDEDYDDNRTCEDEDY------DGDDYADLVQEL 59
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 410 PTEYLDIPADDNIIIENEDSLEINETNSED 499
PTE ++ DDN+ +EDS + +E + +D
Sbjct: 451 PTELAELSFDDNLENSSEDSSDSSEDDDDD 480
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,784,337
Number of Sequences: 59808
Number of extensions: 295363
Number of successful extensions: 905
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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