Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h24
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530...    27   9.3  

>04_04_1299 +
           32450998-32451134,32451575-32452304,32452856-32453053,
           32453398-32454065,32454555-32454978,32455917-32456009,
           32456101-32456295,32456378-32456470,32456718-32456930,
           32457015-32457104,32457239-32457400
          Length = 1000

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +3

Query: 348 VYSVIMKLKKEVDINHG-DSVVWKNIEMASG--PNSPVQTEQDIEDI-FGDSLKTWDHFT 515
           ++S++  LK ++    G  SV    +   +G  P   V T  D+ED   GDS  +     
Sbjct: 614 LFSIVEDLKTDLFTASGWPSVSGDALRSLAGKLPTDLVYTTDDVEDDDSGDSEISEHDLN 673

Query: 516 DDAKKNTFHDAISETQKGKQ 575
           D A   T ++A    +KGK+
Sbjct: 674 DTASYGTAYEAFGGGKKGKE 693


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,015
Number of Sequences: 37544
Number of extensions: 243816
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)