Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h22
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)                   51   7e-07
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       30   1.0  
SB_27818| Best HMM Match : Ion_trans_2 (HMM E-Value=2.5e-33)           27   9.5  

>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
          Length = 501

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
 Frame = +3

Query: 252 EKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKVYVDIREFYE-KN-GELLPGKK 410
           E  +    + +D    + L  K+ + VR+F+GKVYVDIREFYE KN G++ PGKK
Sbjct: 446 EASSSSGTKQDDGSYVFPLANKRQVTVRDFRGKVYVDIREFYEDKNSGDMKPGKK 500


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 246 PAEKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKVYVD-IREFYEKNGEL 395
           P   +A+    +N+     V+Q KKL+ V++      VD +RE++EK GEL
Sbjct: 213 PVTVRARSGKESNEDLMAKVIQSKKLM-VQDLDFDTTVDELREYFEKCGEL 262


>SB_27818| Best HMM Match : Ion_trans_2 (HMM E-Value=2.5e-33)
          Length = 352

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 166 REKKNLRTRKTIVLVVTVMTALKIGTLLLKKRQKW 270
           RE KN+  ++ +V V+ +++ L IG ++    + W
Sbjct: 86  REAKNINIKQMVVAVLLLLSQLLIGGVMYNVTEDW 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,174,935
Number of Sequences: 59808
Number of extensions: 215457
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)