Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h21
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    62   5e-11
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    31   0.15 
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   1.9  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   7.6  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   7.6  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 62.1 bits (144), Expect = 5e-11
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = +2

Query: 254 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXXX 433
           +K++ E +  D EDESL+K+K +L      G      +D R V++ KL+L V GR     
Sbjct: 32  KKSLNEYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRDPVDV 88

Query: 434 XXXXXXXXX--KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQ 559
                      +K+ F IKEG +++I + F VQ E++ GL+YVQ
Sbjct: 89  NMEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQ 132


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 254  EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVE 361
            EKT++E++   +++ SL  Y+E  L + QA  V +E
Sbjct: 1613 EKTLKEVIEDLEKNNSLHAYEEEALNEEQASLVFLE 1648


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 541 VHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSEIQLDIIAPN 410
           +H L  ND++D +  L T L   ++L  +    +   L++  PN
Sbjct: 46  IHKLYRNDELDVFKYLTTQLKDNWILLNLCAEETVYHLELFKPN 89


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 DQEDESLRKYKEALLGQAQAGAVIV 358
           D+  E+++ YK ALLG     +++V
Sbjct: 454 DRPQEAIKSYKRALLGSQTNSSILV 478


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 469 GIRDKGGCTIPNKDRFY 519
           GIRDKGG  I NK+  Y
Sbjct: 85  GIRDKGGVEISNKNDPY 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,200
Number of Sequences: 5004
Number of extensions: 40221
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)