Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h21
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein...    83   1e-16
U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP dissoci...    83   1e-16
AL132863-8|CAB60576.2|  519|Caenorhabditis elegans Hypothetical ...    27   7.0  

>U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein 1
           protein.
          Length = 191

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 47/106 (44%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
 Frame = +2

Query: 239 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 418
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 419 XXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIVQREIVHGLKY 553
                            + V IKEG  YR+   F VQREI  GL Y
Sbjct: 73  TAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHY 118


>U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP
           dissociation inhibitor protein.
          Length = 191

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 47/106 (44%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
 Frame = +2

Query: 239 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 418
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 419 XXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIVQREIVHGLKY 553
                            + V IKEG  YR+   F VQREI  GL Y
Sbjct: 73  TAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHY 118


>AL132863-8|CAB60576.2|  519|Caenorhabditis elegans Hypothetical
           protein Y37H2A.7 protein.
          Length = 519

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 161 FYNKLRNSSYTKLINETKKTLK 96
           FYN LR+  YT+L+    K LK
Sbjct: 390 FYNMLRDDEYTELVENCLKKLK 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,097,529
Number of Sequences: 27780
Number of extensions: 225503
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)