Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h21
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.23 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   4.9  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 553 VLQTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPS 440
           ++   + L L +  D +  L    Y EY ++E+G++ S
Sbjct: 382 LMDETNQLTLQETADAFKDLQDKYYEEYKMYELGELAS 419


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 158 YNKLRNSSYTKLINETKKTLKH 93
           Y +LR  +YTK+++     L+H
Sbjct: 754 YEELRERAYTKILSNGTLLLQH 775


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 158 YNKLRNSSYTKLINETKKTLKH 93
           Y +LR  +YTK+++     L+H
Sbjct: 750 YEELRERAYTKILSNGTLLLQH 771


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 254 EKTIEEI--LAADQEDESLRKYKEALLGQ 334
           ++T+++I  +  D EDE  ++Y E +L Q
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQ 69


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 254 EKTIEEI--LAADQEDESLRKYKEALLGQ 334
           ++T+++I  +  D EDE  ++Y E +L Q
Sbjct: 41  QQTVDDINEVNFDVEDEKPQRYNECILKQ 69


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 422 HRAQPHTMLASSLSLCEDH 366
           H A  H +L  S  LCE H
Sbjct: 282 HHANHHAILGHSGFLCERH 300


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +2

Query: 242 KPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAV 352
           +P P + ++ + A+   + +  +YK  ++    AGAV
Sbjct: 45  QPIPNQELQNLGASYDIESNSHQYKNPIIVMYYAGAV 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,829
Number of Sequences: 438
Number of extensions: 2628
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)