Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h21
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p...    58   3e-09
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p...    46   2e-05
At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family p...    45   3e-05
At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family pr...    28   3.7  
At1g07850.1 68414.m00852 fringe-related protein + weak similarit...    27   6.5  

>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 240

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 39/101 (38%), Positives = 52/101 (51%)
 Frame = +2

Query: 251 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXX 430
           P+ TI+E L  D++DESLRK+KE LLG       I E  DP +V +  LA+   GR    
Sbjct: 66  PQYTIKEHLEKDKDDESLRKWKEQLLGSVDV-TNIGETLDP-EVRIDSLAIISPGR-PDI 122

Query: 431 XXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIVHGLKY 553
                     K   F +KEG +Y ++  F V   IV GL+Y
Sbjct: 123 VLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRY 163


>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +2

Query: 251 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXX 430
           P   ++E L  D++DESLR++KE LLG      V   PD   K++   L +    R    
Sbjct: 49  PMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKIL--DLTIRSPDREEMV 106

Query: 431 XXXXXXXXXXKK-QVFVIKEGVQYRIRIDFIVQREIVHGLKY 553
                      K   F IKEG +Y +  +F V   IV GL+Y
Sbjct: 107 LTIPEDGLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRY 148


>At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +2

Query: 251 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXX 430
           P   ++E L  D++DESLR++KE LLG      V   PD   K++   L +    R    
Sbjct: 49  PMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKILT--LTIRSPDREDMV 106

Query: 431 XXXXXXXXXXKK-QVFVIKEGVQYRIRIDFIVQREIVHGLKY 553
                      K   F +KEG +Y +   F V   IV GL+Y
Sbjct: 107 LTIPENGKPASKGPWFTLKEGSKYTLIFTFRVTNNIVSGLQY 148


>At1g06730.1 68414.m00715 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 488

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +2

Query: 227 IKSSYKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALC 406
           +K+S     EK  E++LA + E   +    + ++   ++   ++E     KV+ + LA  
Sbjct: 418 MKASKLNDEEKFFEQLLAENSESSRINLLSKGMIKDGRSNKQLIETISMEKVVSELLAEL 477

Query: 407 VVGR 418
            +GR
Sbjct: 478 ELGR 481


>At1g07850.1 68414.m00852 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 560

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 437 DPARHHRAQPHTMLASSLSLC 375
           DP R H+  PH + AS L+ C
Sbjct: 521 DPLRWHKVGPHLLFASLLTTC 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,378,982
Number of Sequences: 28952
Number of extensions: 209908
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)