Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h18
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...   102   3e-23
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    33   0.022
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   4.4  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   4.4  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   4.4  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    25   5.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.6  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    25   7.6  

>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score =  102 bits (244), Expect = 3e-23
 Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +2

Query: 86  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDP-NVEVIVGVPAIYLSYVKTIIPDNVE 262
           M RKF VGGN+KMNG    +  I+  L    L+  +VE ++    +YL   +  +  ++ 
Sbjct: 1   MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIG 60

Query: 263 VAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESG 442
           V AQN +    GA+TGE S   + D G+ + + GHSERRTIF E DE VA+K   ALE G
Sbjct: 61  VGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQG 120

Query: 443 LKVI 454
           L V+
Sbjct: 121 LTVV 124


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 33.1 bits (72), Expect = 0.022
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = -1

Query: 394 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLH 233
           F  + ++   TK N + SN+F+H+  + T +SS     T L     IIRNDS H
Sbjct: 26  FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCL----KIIRNDSFH 75


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 251 DNVEVAAQNCWKSPKGAFTGEISPA 325
           D  E A+     SP G+FT +ISPA
Sbjct: 752 DGHEQASPLVSSSPSGSFTSQISPA 776


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -1

Query: 340 NVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLHIRQVNSRNTNNYLNIRI*RSLF*I 161
           N+FD     +  KS F     +   N  +I  DS  ++     NT    N     SLF  
Sbjct: 193 NIFDLDSGKWVFKSLFNHHCGIYRSNCVVINKDSEFLQMCRPINTTQDSNEHSIGSLFFY 252

Query: 160 INY-FVDLIFVTIHL 119
           +NY FV++    I+L
Sbjct: 253 LNYNFVNVKRQVIYL 267


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 23/83 (27%), Positives = 33/83 (39%)
 Frame = +2

Query: 71  NKITEMGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIP 250
           + I E+ R+ +    WK+   K  + E+    K+G L   +EV     A  +S VK I  
Sbjct: 279 DSILEICRERLAPKGWKITEGKYSMKEVAQASKEGRL---LEVFGAGTAALVSPVKAINY 335

Query: 251 DNVEVAAQNCWKSPKGAFTGEIS 319
              E           G  T EIS
Sbjct: 336 KGTEYEIPMPEGQEAGPITSEIS 358


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 236 KTIIPDNVEVAAQNCWKSPKGAFTG 310
           + +I D+V +  Q+CWK  + A  G
Sbjct: 231 RIVIRDSVTLEPQHCWKHHRDAVMG 255


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 283 PTVLGCNFDIIRNDSLHIRQVNSRNTNNYLNIRI 182
           P  L  N D IR    ++      N NNY N+ +
Sbjct: 110 PDDLKVNADYIRMADQYVEVPGGSNNNNYANVEL 143


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 359 LGHSERRTIFGEKDELVAEKVA 424
           +G S+R+ +FG +DE   + +A
Sbjct: 85  IGKSDRKALFGNRDETSGDYIA 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,633
Number of Sequences: 5004
Number of extensions: 37739
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)