Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10h18
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 136 6e-33
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 128 2e-30
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 116 1e-26
09_01_0088 + 1268120-1268139,1268288-1268361,1268500-1268750,126... 33 0.15
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396... 31 0.61
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 2.5
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 3.3
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 4.3
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 27 10.0
03_06_0681 - 35512161-35512753,35512882-35513380 27 10.0
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 136 bits (330), Expect = 6e-33
Identities = 59/120 (49%), Positives = 81/120 (67%)
Frame = +2
Query: 95 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQ 274
KF VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQ
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQ 113
Query: 275 NCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVI 454
N W GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVI
Sbjct: 114 NVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVI 173
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 128 bits (310), Expect = 2e-30
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 2/123 (1%)
Frame = +2
Query: 92 RKFVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 265
RKF VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + V
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSV 63
Query: 266 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 445
AAQNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+
Sbjct: 64 AAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGI 123
Query: 446 KVI 454
KVI
Sbjct: 124 KVI 126
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 116 bits (278), Expect = 1e-26
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 2/114 (1%)
Frame = +2
Query: 119 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 292
++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63
Query: 293 KGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVI 454
GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVI
Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVI 117
>09_01_0088 +
1268120-1268139,1268288-1268361,1268500-1268750,
1268845-1269048,1269488-1269805,1269893-1269910
Length = 294
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 29 LQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNV 193
LQ H + +V S I+E+ RKF + G NW ++ ++ + + LKKG PN+
Sbjct: 95 LQWNHKLYKRVYYSKMISEVERKFAIDGRANNWILHQLDGKLRQYKSKLKKGYYKPNL 152
>01_04_0083 -
15838922-15839065,15839153-15839443,15839555-15839653,
15839733-15839825,15839913-15840116,15840209-15840459,
15841045-15841096,15841527-15841625,15842222-15842299
Length = 436
Score = 30.7 bits (66), Expect = 0.61
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 29 LQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNVEV 199
LQ H + +V I+E+ RKF + G NW ++ + + + LKKG PN+ +
Sbjct: 140 LQWNHKLYKRVYHPKMISEVERKFAIDGRANNWNLHQLDGKWRQYKSKLKKGYYKPNLSM 199
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 274 LGCNFDIIRNDSLHIRQVNSRNTNNYL 194
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +2
Query: 77 ITEMGRKFVVGGNWKMNGDKN-----QINEIVNNLKKG 175
+ ++ ++F+ GGN +NGD + I E+V L+KG
Sbjct: 709 LNKLAKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKG 746
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 357 ITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT 232
+T +SL +AG ISPV Q +TLSG + FT
Sbjct: 80 VTSLNLSSLGLAGSISPVIGNLTFLQSLDLFNNTLSGDVYFT 121
>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = -2
Query: 129 PFIFQLP---PTTNLRPIS-VILFELPTFQQISCINCSVLLSL 13
P + +LP PTT RP L + PT +++ +NC L SL
Sbjct: 972 PELMELPFSHPTTCSRPEQGTNLTQFPTLKKLEIVNCQKLSSL 1014
>03_06_0681 - 35512161-35512753,35512882-35513380
Length = 363
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 99 NLRPISVILFELPTFQQISCINCSVLLSL 13
+L+ + L ELP+ QQ++ +C L+SL
Sbjct: 281 SLKSLESCLGELPSLQQLTLFDCESLVSL 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,228,541
Number of Sequences: 37544
Number of extensions: 216604
Number of successful extensions: 506
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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