Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h18
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12178| Best HMM Match : TIM (HMM E-Value=0)                         78   4e-15
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   7e-08
SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   6e-05
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                27   7.7  

>SB_12178| Best HMM Match : TIM (HMM E-Value=0)
          Length = 203

 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 35/68 (51%), Positives = 49/68 (72%)
 Frame = +2

Query: 251 DNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 430
           D++   AQNC +   GA+TGE+S AM+  +GVN+VI+GHSERR  F E +E +A+KV  A
Sbjct: 7   DHISTGAQNCHEKASGAYTGEVSAAMLAHLGVNYVIIGHSERREYFNESNEQLAQKVDAA 66

Query: 431 LESGLKVI 454
           L + L+VI
Sbjct: 67  LVNNLQVI 74


>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 43.6 bits (98), Expect(2) = 7e-08
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +2

Query: 197 VIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGA 301
           ++V  PA+YLSYV+     N+ VAAQNC+K   GA
Sbjct: 218 IVVSPPALYLSYVRKAAKQNIGVAAQNCYKVASGA 252



 Score = 29.9 bits (64), Expect(2) = 7e-08
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 398 DELVAEKVAHALESGLKVI 454
           D+L+ EKVAHAL + +KVI
Sbjct: 257 DQLIGEKVAHALSANVKVI 275


>SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +2

Query: 86  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNV 193
           MGR+F VGGNWK+NG +  I E++    K  LD +V
Sbjct: 1   MGRRFFVGGNWKLNGSRASIQELLEAWGKADLDKSV 36



 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 188 NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGE 313
           + EV++  PA+Y  +++  +P    +A QN +K   GAFTGE
Sbjct: 79  DTEVVISPPAVYADFLRANMPAEFGLALQNVYKEGSGAFTGE 120


>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 354 TQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT*DR*IAGTPTITSTLG 184
           T  T   +II G +  +  PF      W  T+T+  + +F     + GTP  TS  G
Sbjct: 254 TWLTYIIMIILGHLVILSVPFFATSTAWTLTNTMHNLCMFLLLHYVKGTPFETSDQG 310


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 467 TNTGQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 360
           T  G  +  Q Q  +QP+QQQ   + Q+  + Q  Q
Sbjct: 218 TQQGVSMQQQYQWQQQPYQQQTQQWQQQTSYQQQQQ 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,026,812
Number of Sequences: 59808
Number of extensions: 255186
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)