Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h18
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   202   1e-54
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.94 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.8  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   6.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.7  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  202 bits (493), Expect = 1e-54
 Identities = 92/123 (74%), Positives = 106/123 (86%)
 Frame = +2

Query: 86  MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 265
           MGRKF VGGNWKMNG K++IN+IV  LKKGPLD NVEV+VGVP+IYL+Y K I+P+N+ +
Sbjct: 1   MGRKFFVGGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISI 60

Query: 266 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 445
           A QN +K  KGAFTGEISPAM+ D G+ WVILGHSERR IFGE DEL+AEKVAHALESGL
Sbjct: 61  AGQNTYKVAKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHALESGL 120

Query: 446 KVI 454
           KVI
Sbjct: 121 KVI 123


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 98  FVVGGNWKMNGDKNQINEIVNNLKKGP-LDPNVEVIVGVPAIYLSYVKTIIP 250
           F+  G W + G   + NEI  N    P +D    VI+    +Y  +   I+P
Sbjct: 191 FITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFVVIIRRRTLYY-FFNLIVP 241



 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 425 HALESGLKVIXLYW 466
           H +   +KV+ LYW
Sbjct: 326 HEMSEWVKVVFLYW 339


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 446 SSQIQGHEQPFQQQ 405
           S+ +Q H +P+QQQ
Sbjct: 153 STAVQDHHRPYQQQ 166


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +2

Query: 200 IVGVPAIYLSYVKTIIPDNVEVAAQN 277
           ++G P+  + Y   +IP+   ++ +N
Sbjct: 848 VIGTPSTGMMYKPFLIPEQTSISHEN 873


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 131 DKNQINEIVNNLK 169
           D  Q+N +VNN K
Sbjct: 92  DSEQVNRLVNNCK 104


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 83  EMGRKFVVGGNWKMNGDKNQINEIVNNLKKG 175
           ++GR + +  N  M  DKN + + +   K+G
Sbjct: 58  DVGRNYDMESNMDMYKDKNVVQKFLWWYKQG 88


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 83  EMGRKFVVGGNWKMNGDKNQINEIVNNLKKG 175
           ++GR + +  N  M  DKN + + +   K+G
Sbjct: 58  DVGRNYDMESNMDMYKDKNVVQKFLWWYKQG 88


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 313 NFTRYDQRRWSKLGYTWSF*KKNN 384
           NF   + RR S LG T ++  K+N
Sbjct: 368 NFNESENRRNSCLGSTETYYSKHN 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,495
Number of Sequences: 438
Number of extensions: 2921
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)