Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10h18
(469 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21170.1 68415.m02511 triosephosphate isomerase, chloroplast,... 138 2e-33
At3g55440.1 68416.m06157 triosephosphate isomerase, cytosolic, p... 132 9e-32
At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB... 30 0.68
At5g41800.1 68418.m05089 amino acid transporter family protein s... 29 1.6
At1g61670.1 68414.m06956 expressed protein similar to membrane p... 29 1.6
At4g15380.1 68417.m02350 cytochrome P450 family protein similar ... 28 3.6
At1g24807.1 68414.m03108 anthranilate synthase beta subunit, put... 28 3.6
At5g57890.1 68418.m07242 anthranilate synthase beta subunit, put... 27 4.8
At3g07430.1 68416.m00886 YGGT family protein contains Pfam profi... 27 4.8
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 27 6.3
At1g08460.1 68414.m00936 histone deacetylase family protein (HDA... 27 6.3
At4g17090.1 68417.m02575 beta-amylase (CT-BMY) / 1,4-alpha-D-glu... 27 8.4
At1g25155.1 68414.m03123 anthranilate synthase beta subunit, put... 27 8.4
At1g25083.1 68414.m03118 anthranilate synthase beta subunit, put... 27 8.4
At1g24909.1 68414.m03112 anthranilate synthase beta subunit, put... 27 8.4
>At2g21170.1 68415.m02511 triosephosphate isomerase, chloroplast,
putative similar to Triosephosphate isomerase,
chloroplast precursor: SP|P48496 from Spinacia oleracea,
SP|P46225 from Secale cereale
Length = 315
Score = 138 bits (334), Expect = 2e-33
Identities = 64/149 (42%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Frame = +2
Query: 14 KLNSTLQLIHDIC*KVGSSNKITEMGR--KFVVGGNWKMNGDKNQINEIVNNLKKGPLDP 187
++NS+ +L+ S + M KF VGGNWK NG K+ I +++++L L+
Sbjct: 36 RVNSSTRLVSSSSSSHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEA 95
Query: 188 NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGH 367
+V+V+V P +Y+ VK+ + D ++++ QN W GAFTGEIS +KD+G WVILGH
Sbjct: 96 DVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGH 155
Query: 368 SERRTIFGEKDELVAEKVAHALESGLKVI 454
SERR + GEKDE + +K A+AL GL VI
Sbjct: 156 SERRHVIGEKDEFIGKKAAYALSEGLGVI 184
>At3g55440.1 68416.m06157 triosephosphate isomerase, cytosolic,
putative strong similarity to triosephosphate isomerase,
cytosolic from Petunia hybrida [SP|P48495], from Coptis
japonica [SP|P21820]
Length = 254
Score = 132 bits (320), Expect = 9e-32
Identities = 64/125 (51%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Frame = +2
Query: 86 MGRKFVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNV 259
M RKF VGGNWK NG ++ +IVN L + P VEV+V P ++L VK+ + +
Sbjct: 1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60
Query: 260 EVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALES 439
VAAQNCW GAFTGE+S M+ ++ + WVILGHSERR I E E V +KVA+AL
Sbjct: 61 FVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQ 120
Query: 440 GLKVI 454
GLKVI
Sbjct: 121 GLKVI 125
>At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB1)
identical to anthranilate synthase beta subunit
GI:403434 from [Arabidopsis thaliana]
Length = 276
Score = 30.3 bits (65), Expect = 0.68
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 274 LGCNFDIIRNDSLHIRQVNSRNTNNYL 194
LGC+F++ RND L + ++ +N L
Sbjct: 95 LGCHFEVYRNDELTVEELKKKNPRGVL 121
>At5g41800.1 68418.m05089 amino acid transporter family protein
similar to amino acid permease 1 [Nicotiana sylvestris]
GI:976402; belongs to INTERPRO:IPR002422 amino
acid/polyamine transporter, family II
Length = 452
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 87 ISVILFELPTFQQISCINC-SVLLSLSY 7
+ ++L +LP+F + INC S+LLSL Y
Sbjct: 162 VMMVLSQLPSFHSLRHINCASLLLSLGY 189
>At1g61670.1 68414.m06956 expressed protein similar to membrane
protein PTM1 precursor isolog GI:1931644 from
[Arabidopsis thaliana]
Length = 513
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 197 VIVGVPAIYLSYVKTIIP--DNVEVAAQNCWKSPKGAFTGEISPAM 328
V++ +Y Y P D + + WK+P G G+++P M
Sbjct: 175 VVINKTGMYYLYFMICDPELDGTRIKGRTVWKNPDGYLPGKVAPLM 220
>At4g15380.1 68417.m02350 cytochrome P450 family protein similar to
CYTOCHROME P450 93A3 (P450 CP5) (SP:O81973) [Glycine
max]
Length = 517
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 348 FTPTS-LIIAGEISPVKAPFGDFQQF 274
FTPT + AG S + AP+GD+ +F
Sbjct: 112 FTPTDDSLFAGSFSFISAPYGDYWKF 137
>At1g24807.1 68414.m03108 anthranilate synthase beta subunit,
putative similar to anthranilate synthase beta chain
GI:403434; similar to ESTs dbj|AV540153.1,
dbj|AV557490.1, gb|AI997696.1, gb|AW004516.1,
dbj|AV521371.1
Length = 235
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 316 NFTSKSSFWRLPTVLGCNFDIIRNDSLHIRQVNSRNTNNYL 194
NF + F + L C+F++ RND L + ++ +N L
Sbjct: 40 NFENCYLFLQYMGELQCHFEVYRNDELTVEELKRKNPRGVL 80
>At5g57890.1 68418.m07242 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
chain GI:403434 [Arabidopsis thaliana]
Length = 273
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 274 LGCNFDIIRNDSLHIRQVNSRNTNNYL 194
LGC+F++ RND L + ++ + L
Sbjct: 92 LGCHFEVYRNDELTVEELKRKKPRGLL 118
>At3g07430.1 68416.m00886 YGGT family protein contains Pfam profile
PF02325: YGGT family (unknown function)
Length = 232
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 363 PSITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSG 247
PS++ P S+ I+ SP+ P ++ A +STL+G
Sbjct: 44 PSLSIQNPKSIRISASASPITTPILQTEKSTARSSTLTG 82
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 277 VLGCNFDIIRNDSLHIRQVNSRNTNNYLNIRI 182
VLG DI D LHI + + + +N L ++I
Sbjct: 533 VLGITLDIDETDELHIHESSFKGMHNLLFLKI 564
>At1g08460.1 68414.m00936 histone deacetylase family protein (HDA8)
identical to HDA8 [Arabidopsis thaliana] GI:21360988low
similarity to SP|Q9Z2V5 Histone deacetylase 6 (HD6)
(Histone deacetylase mHDA2) {Mus musculus}; contains
Pfam profile PF00850: Histone deacetylase family;
supporting cDNA gi|21360987|gb|AF510167.1|
Length = 377
Score = 27.1 bits (57), Expect = 6.3
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +2
Query: 137 NQINEIVNNLKKGPLDPNVEVIVGVPAI 220
+++ +++ L++GP+ P+V G+PAI
Sbjct: 44 DRVRNMLSILRRGPIAPHVNWFTGLPAI 71
>At4g17090.1 68417.m02575 beta-amylase (CT-BMY) / 1,4-alpha-D-glucan
maltohydrolase identical to beta-amylase enzyme
GI:6065749 from [Arabidopsis thaliana]
Length = 548
Score = 26.6 bits (56), Expect = 8.4
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 86 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNV--EVIVGVPAIYLSYVKTIIPDNV 259
M ++ G NW+ Q+ E V N+K+G + E G +Y+ +VK I +NV
Sbjct: 490 MNKRLFEGQNWQ------QLVEFVKNMKEGGHGRRLSKEDTTGSD-LYVGFVKGKIAENV 542
Query: 260 EVAA 271
E AA
Sbjct: 543 EEAA 546
>At1g25155.1 68414.m03123 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana)
Length = 222
Score = 26.6 bits (56), Expect = 8.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 274 LGCNFDIIRNDSLHIRQVNSRNTNNYL 194
L C+F++ RND L + ++ +N L
Sbjct: 41 LQCHFEVYRNDELTVEELKRKNPRGVL 67
>At1g25083.1 68414.m03118 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana); similar
to ESTs dbj|AV540153.1, dbj|AV557490.1, gb|AI997696.1,
gb|AW004516.1, dbj|AV521371.1
Length = 222
Score = 26.6 bits (56), Expect = 8.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 274 LGCNFDIIRNDSLHIRQVNSRNTNNYL 194
L C+F++ RND L + ++ +N L
Sbjct: 41 LQCHFEVYRNDELTVEELKRKNPRGVL 67
>At1g24909.1 68414.m03112 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana)
Length = 222
Score = 26.6 bits (56), Expect = 8.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 274 LGCNFDIIRNDSLHIRQVNSRNTNNYL 194
L C+F++ RND L + ++ +N L
Sbjct: 41 LQCHFEVYRNDELTVEELKRKNPRGVL 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,458,743
Number of Sequences: 28952
Number of extensions: 187496
Number of successful extensions: 516
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -