Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10h17
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 69 4e-12
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 36 0.025
12_02_1159 + 26585042-26585441,26585520-26585608,26585670-265857... 34 0.100
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 29 2.2
02_05_0814 - 31970558-31971126,31971242-31971413 29 2.2
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 2.8
01_01_0710 + 5492389-5492745,5493664-5493948,5494121-5494438,549... 29 3.8
11_01_0599 - 4777964-4778842 28 5.0
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 28 6.6
06_01_0882 + 6759378-6759707,6759837-6760488,6760609-6760673,676... 28 6.6
11_06_0253 - 21716164-21717144 27 8.7
11_06_0081 + 19886848-19888050,19888243-19888896 27 8.7
04_01_0365 - 4796780-4796971,4797246-4797327,4797417-4797527,479... 27 8.7
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 27 8.7
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654... 27 8.7
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 68.5 bits (160), Expect = 4e-12
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 13/97 (13%)
Frame = +1
Query: 349 LHPLVIMNVSEHWTRLKAQE-------------GFPQTVVGALIGKQKGRNIEVMNSFEL 489
LHPLVI+NVS+H TR+KAQ G P V G +IG Q+GR +E+ NSFEL
Sbjct: 31 LHPLVIVNVSDHHTRVKAQAACSGDGASSAAAGGQPPRVFGCVIGVQRGRTVEIFNSFEL 90
Query: 490 VFSMXXXXXXXXXXYYNMKEEQFXQVFSDMDFLGWYT 600
V + + K+E + +VF D LGWY+
Sbjct: 91 V--LDPVSGTLDRAFLEKKQELYKKVFPDFYVLGWYS 125
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 349 LHPLVIMNVSEHWTRLKAQEGFPQTVVGALIGKQKGRNIEVMNSFELVFSMXXXXXXXXX 528
+HPLV++++ +H+ R+ + VVG L+G +++V NS+ + F
Sbjct: 19 VHPLVLLSIVDHYNRVARDTR--KRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 529 XYYNMKEEQF 558
+N E F
Sbjct: 77 LDHNYHESMF 86
>12_02_1159 +
26585042-26585441,26585520-26585608,26585670-26585720,
26586189-26586282,26586451-26586512,26586589-26586671,
26586793-26586901,26587010-26587051,26587152-26587316,
26588165-26588341,26588820-26588984,26589069-26589332
Length = 566
Score = 33.9 bits (74), Expect = 0.100
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 415 PQTVVGALIGKQKGRNIEVMNSFELVFSMXXXXXXXXXXYYNMKEEQFXQVFSDMDFLGW 594
P + G +IG Q+GR +EV+++ +++ + K E + + F + LGW
Sbjct: 89 PPRMYGCVIGVQRGRTVEVVDTSDIL--LDTDPGTLDRDLLKKKLETYKKAFPGLAILGW 146
Query: 595 YT 600
Y+
Sbjct: 147 YS 148
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 169 PRVKMSSADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPG 294
PRV + R +EME ++ + GP + P +P PT G
Sbjct: 163 PRV-VRPIKRTSYEMEPQIRRPAQGPGFYMQRPPTPPPTPRG 203
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 229 SASSGPPIEVPNPTSPAPTTP 291
S+ S P PNP++P PTTP
Sbjct: 145 SSPSSPTPTTPNPSTPTPTTP 165
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 169 PRVKMSSADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSN 300
P + ++A + E+ E+ S P + PN +PAPT N
Sbjct: 2921 PSCQRNAAFDSENEVSAEINLTGSQAPCDAPNKATPAPTEDDHN 2964
>01_01_0710 +
5492389-5492745,5493664-5493948,5494121-5494438,
5494900-5495127,5495884-5495984,5496493-5496604,
5496654-5496662,5496897-5497340,5497649-5497909
Length = 704
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 226 ESASSGPPIEVPNPTSPAPTTPGSNK 303
E ++SG PIE P PT PA ++ S +
Sbjct: 490 EDSASGFPIEPPRPTHPAESSQDSQR 515
>11_01_0599 - 4777964-4778842
Length = 292
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 181 MSSADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSN 300
+SS D ++ E EVE ++A + P+ P+SP + P N
Sbjct: 67 VSSPDAMEAEPEVEEDAAPAVVPMMYSAPSSPQSSPPPPN 106
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 73 QFNIYDLTIIFSSLHFGDN 17
++ IYDL FSS HF DN
Sbjct: 926 EYEIYDLRPFFSSAHFRDN 944
>06_01_0882 +
6759378-6759707,6759837-6760488,6760609-6760673,
6761363-6761440,6761523-6761633,6761739-6761783,
6762200-6762373,6762841-6763797
Length = 803
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 244 PPIEVPNPTSPAPTTPGSN 300
P +P+ T+PAP PGSN
Sbjct: 207 PEFVIPDATAPAPPPPGSN 225
>11_06_0253 - 21716164-21717144
Length = 326
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 229 SASSGPPIEVPNPTSPAPTTPGS 297
SASS P P T+PAP TP +
Sbjct: 290 SASSSAPAADPPATAPAPATPSA 312
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 199 IDFEMEVEVESASSGPPIEVPNPTSPAPTTPGSN 300
I + + +V S PP P P +PAPTT N
Sbjct: 248 IPVKSKPDVSQLRSPPPPPPPPPAAPAPTTNRKN 281
>04_01_0365 -
4796780-4796971,4797246-4797327,4797417-4797527,
4797608-4797859,4797945-4800115
Length = 935
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 229 SASSGPPIEVPNPTSPAPTTP 291
S S PP+ VP P +PT+P
Sbjct: 513 SPSQQPPLPVPQPVQASPTSP 533
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 229 SASSGPPIEVPNPTSPAPTTPGS 297
S+ S PP P P SP P+TP +
Sbjct: 1146 SSQSPPPGSSPPPASPPPSTPSA 1168
>03_02_0222 +
6540095-6540099,6541215-6541339,6541440-6541766,
6541815-6543215,6543268-6543357,6543800-6544515,
6545549-6545707,6545877-6546186,6546794-6546861,
6547354-6547896
Length = 1247
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 361 VIMNVSEHWTRLKAQEGFPQTVVGALIGKQK 453
++ +S+HWT + E T+V +L KQ+
Sbjct: 567 IVNTLSKHWTTTREAEFLASTIVSSLTEKQQ 597
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,142
Number of Sequences: 37544
Number of extensions: 229696
Number of successful extensions: 888
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -