Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h17
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16297| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_3150| Best HMM Match : Equine_IAV_S2 (HMM E-Value=7.7)              44   9e-05
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.011
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)                 28   5.0  
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)                       27   8.8  
SB_11770| Best HMM Match : Pollen_allerg_2 (HMM E-Value=3.2)           27   8.8  

>SB_16297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 17/23 (73%), Positives = 22/23 (95%)
 Frame = +1

Query: 349 LHPLVIMNVSEHWTRLKAQEGFP 417
           LHPLVI+N+SEH+TR++AQEG P
Sbjct: 29  LHPLVILNISEHYTRIRAQEGKP 51


>SB_3150| Best HMM Match : Equine_IAV_S2 (HMM E-Value=7.7)
          Length = 55

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 17/23 (73%), Positives = 22/23 (95%)
 Frame = +1

Query: 349 LHPLVIMNVSEHWTRLKAQEGFP 417
           LHPLVI+N+SEH+TR++AQEG P
Sbjct: 29  LHPLVILNISEHYTRIRAQEGKP 51


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 16/49 (32%), Positives = 32/49 (65%)
 Frame = +1

Query: 349 LHPLVIMNVSEHWTRLKAQEGFPQTVVGALIGKQKGRNIEVMNSFELVF 495
           +HP+V+++V +H+ R+  + G  + VVG L+G ++   ++V N F + F
Sbjct: 13  VHPIVLLSVVDHFNRM-GKVGSQKRVVGVLLGSRRKGVLDVANCFAVPF 60


>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 157 EFSYPRVKMSSADRIDF---EMEVEVESASSGPPIE-VPNPTSPAPTTPGS 297
           E   P+   S ADR+ +   +   E ++AS+  P++ VP P SPA  TP S
Sbjct: 360 EMEPPKKLGSVADRMAYFRQQAAKEQKAASTSMPVKKVPAPVSPAQPTPPS 410


>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
          Length = 1011

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 163 SYPRVKMSSADRIDFEMEVEVESASSGPPIEVPNPTSPAPTTP 291
           +Y R K+S    +D   EV  +   + P  +  NPT P   +P
Sbjct: 491 AYQRWKLSGRVEMDATPEVSPKKTDTSPTSQSENPTKPIEQSP 533


>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
          Length = 346

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 173 ELKCQVLIELISKWKWK*RVHLQVRRLKCLTQHPRRLQH 289
           E+    L++   + +W+ +V L V+ L+ L+ HP  L H
Sbjct: 112 EMCILALLDCFGESQWQEQVQLLVKHLEQLSTHPTNLLH 150


>SB_11770| Best HMM Match : Pollen_allerg_2 (HMM E-Value=3.2)
          Length = 145

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 211 MEVEVESASSGPPIEVPNPTSPAPTTP 291
           + V   S  S PP+ + +P SP+P TP
Sbjct: 19  LPVYTASYPSPPPVAMASPRSPSPRTP 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,902
Number of Sequences: 59808
Number of extensions: 289869
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)