Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10h16
(545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 157 3e-44
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 33 0.20
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 31 0.81
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11) 29 3.3
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 28 4.3
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 4.3
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 4.3
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 28 5.7
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 7.6
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 7.6
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 157 bits (380), Expect(2) = 3e-44
Identities = 76/114 (66%), Positives = 94/114 (82%)
Frame = +3
Query: 30 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 209
S KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP
Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67
Query: 210 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 371
+P+++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 68 VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 39.5 bits (88), Expect(2) = 3e-44
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 483 HLDKNQQTTIEHKVDTFQSVY 545
HLDK QQTTI+HK++TF +VY
Sbjct: 121 HLDKTQQTTIDHKLETFSTVY 141
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 32.7 bits (71), Expect = 0.20
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Frame = +3
Query: 9 SRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIE---LH 179
+R + S K D ++ + + + + K L+E+ I ++K+ E +
Sbjct: 226 TRSTIARSPKHDDEKDNSGDDIDSDKEDSSGDAPHHEEKKEDLKEVVIKQSKQDEATAIK 285
Query: 180 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-----GKHVVFVGDRKILPKPSHKTRV 344
+ KS PKLKA Q + + KK K V+ LP+ +H+
Sbjct: 286 DSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKPVKRAKKVLNKKKMDTLPRGAHRPAS 345
Query: 345 ANKQKRPRS 371
AN Q+RP++
Sbjct: 346 ANAQRRPQN 354
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 30.7 bits (66), Expect = 0.81
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Frame = +3
Query: 21 VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 182
V+MS ++ +++SG +S E+ + E N+ LK +L E L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726
Query: 183 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 356
K + +YV M KL++ Q ELEK+ ++ ++I P K S T VA +
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
Length = 237
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 353 FVSNTSFVAGLRQDLTVSNKDYMFTTE 273
F+ N SFV+ + DLT S+ D+ + TE
Sbjct: 40 FIPNLSFVSAVLWDLTKSSSDFQWHTE 66
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 28.3 bits (60), Expect = 4.3
Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 3/152 (1%)
Frame = +3
Query: 9 SRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKK 188
S +V S +++KA + D + + L + + ++ + QL + + + E K
Sbjct: 265 SSQVRSRSGRVVKAKKLDYDDVISPKFEPLKKEDNSNKISTQLLSVK-RELESGETPPSK 323
Query: 189 SIIIYVPMPKLKAFQKIQIRLVRELEKKFSG---KHVVFVGDRKILPKPSHKTRVANKQK 359
+ +P P K + V E +K KH + K P+ V +
Sbjct: 324 IQRLELPEPDKSINSKDSLNHVEEKPRKVHKVRLKHATVPVEGKEAPQ----NNVMKSRP 379
Query: 360 RPRSRTLTSVYNAILEDLVFPAEIVGKRIRVK 455
+ R + ++++ E +FP E +GK+ + K
Sbjct: 380 KVRIKNCVVAHSSVFEKALFPEESLGKKYKKK 411
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 66 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 233
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 118 PTSKPNFGSFTLQKLKKLNYTIRS 189
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 323 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 183
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216
>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
Length = 417
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = +1
Query: 97 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 195
WS+ KPTP KPN FG T Q L+K N+ + RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166
>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1732
Score = 27.5 bits (58), Expect = 7.6
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 6 PSRKVVKMSTKII--KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 179
P + +K ++ + S + + ++ + + L + DL +Q RE KA++ + +
Sbjct: 932 PDKNTIKEGSRSVPFNLSALQEEEEDSDSANSFRALPSAVDLVSQGRE-GDGKAEDEDTN 990
Query: 180 NKKSIIIYVPMPKLKAFQKIQIRLVRELE 266
NK+ Y M KL + I +V ELE
Sbjct: 991 NKEQTYDYTFMKKLPTGAEASIAMVGELE 1019
>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 508 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 401
V+CW L + + + EP N L +L ++ GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +3
Query: 204 VPMPKLKAFQKIQIRLVRELEKKFSG 281
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Frame = +3
Query: 57 AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 221
A+ + + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296
Query: 222 KAFQKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 335
+ + + +RE+E++F K+ + +R++ + K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,405
Number of Sequences: 59808
Number of extensions: 309327
Number of successful extensions: 954
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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