Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h15
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49522| Best HMM Match : WXG100 (HMM E-Value=9.4)                    32   0.42 
SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)              29   2.3  
SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)                   29   3.0  
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      29   4.0  
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     28   6.9  

>SB_49522| Best HMM Match : WXG100 (HMM E-Value=9.4)
          Length = 161

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 284 NVKEQFVNFSEKFKTKMNDFVSDSKNMIFTEDLKNMVHLAEP-SDLQLVLNMIKKFNTQS 460
           N  EQF+N +E+F      FV+ S+   F   L+  ++  E   +  L +N  ++F   S
Sbjct: 19  NTSEQFINTTEQFVNTTEQFVNTSEE--FVNTLQQFINTTEQFVNTSLFVNTSEQFVNTS 76

Query: 461 TEF 469
            EF
Sbjct: 77  EEF 79



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 284 NVKEQFVNFSEKFKTKMNDFVSDSKNMIFTED 379
           N  EQFVN SE+F     +FV  S+  + T +
Sbjct: 102 NTTEQFVNTSEQFVNTSEEFVKTSEQFVNTTE 133



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 284 NVKEQFVNFSEKFKTKMNDFVSDSKNMIFTED 379
           N  EQFVN +E+F      FV+ S+  + T +
Sbjct: 95  NTSEQFVNTTEQFVNTSEQFVNTSEEFVKTSE 126


>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
          Length = 327

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 308 FSEKFKTKMNDFVSDSKNMIF-TEDLKNMVHLAEPSDLQLV-LNMIKKFN 451
           F E F + M + + DS+++   TE+L   + LA PSD+ L  L ++K  N
Sbjct: 48  FQEHFSSTMVNEMKDSESVKRQTEELLETMDLANPSDVDLAHLGLLKSHN 97


>SB_19105| Best HMM Match : 7tm_1 (HMM E-Value=5e-08)
          Length = 791

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +2

Query: 287 VKEQFVNFSEKFKTKMNDFVSDS-KNMIFTE--DLKNMVHLAEPSDLQLVLNMIKKFNTQ 457
           +++++++F  +F+ ++      S ++ IF +  D    VH   PS  Q   N + K    
Sbjct: 115 IEKEWISFGHRFRDRLGHPTCPSQRSPIFLQFLDCVWQVHKQFPSAFQFTANYLLKLADH 174

Query: 458 STEFRFGSFVFGPVVMRMFHFL 523
                FG+F++  V  R   F+
Sbjct: 175 VNSQWFGNFLYNNVQERHHAFI 196


>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 504  ITTGPNTNEPNLNSVLCVLNFLIIFSTSCKSD 409
            +T  P  NEPN ++    ++  II+ T C+SD
Sbjct: 1429 VTQNPYFNEPNYDNTDSNISVDIIYETKCQSD 1460


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +2

Query: 332 MNDFVSDSKNMIFTEDLKNMVHL--AEPSDLQL--VLNMIKKFNTQSTEFRFGSFVFGPV 499
           ++D++  ++   F  D+K ++H   AE S+ ++   +  +K       EF     +   +
Sbjct: 109 VSDYIITNELRTFKADMKAILHNYGAELSEERIKECMKALKTKKFSKLEFCLRQLILA-L 167

Query: 500 VMRMFHFLDAPKEALQCFEEPANDG 574
           V R+F    A  E+L+C  +PA  G
Sbjct: 168 VERLFEGGAADIESLECLTQPATGG 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,827,621
Number of Sequences: 59808
Number of extensions: 372391
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)