Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h15
         (615 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21210.1 68416.m02680 universal stress protein (USP) family p...    29   3.2  
At1g55900.1 68414.m06411 NLI interacting factor (NIF) family pro...    28   4.3  
At5g01760.1 68418.m00095 VHS domain-containing protein / GAT dom...    28   5.7  
At4g25970.1 68417.m03737 phosphatidylserine decarboxylase, putat...    28   5.7  
At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative (CH...    27   9.9  
At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At3g21210.1 68416.m02680 universal stress protein (USP) family
           protein / DC1 domain-containing protein contains Pfam
           profiles PF03107: DC1 domain, PF00582: universal stress
           protein family
          Length = 686

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 511 HPHYNWAKHE*TKSELCTLCVEFFNH 434
           HPH  +  HE T  E C++C +   H
Sbjct: 537 HPHPIYLIHESTAQEFCSICGQLIGH 562


>At1g55900.1 68414.m06411 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 376

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 233 LYAPATIG----IDGYLQARKNVKEQFVNFSEKFKTKMNDFVSDSKNMIFT 373
           LY+ A  G    ID YL+ R+ V+EQ   F+E    K+   +  ++  +FT
Sbjct: 142 LYSAAMTGSARAIDKYLELREIVEEQVKGFTEPLSEKLLPDLHPAEQHVFT 192


>At5g01760.1 68418.m00095 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to Hrs [Rattus
           norvegicus] GI:8547026; contains Pfam profiles PF00790:
           VHS domain, PF03127: GAT domain
          Length = 542

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 514 KHPHYNWAKHE 482
           KHPHYNWA  E
Sbjct: 139 KHPHYNWAYQE 149


>At4g25970.1 68417.m03737 phosphatidylserine decarboxylase, putative
           similar to SP|P53037 Phosphatidylserine decarboxylase
           proenzyme 2 precursor (EC 4.1.1.65) {Saccharomyces
           cerevisiae}; contains Pfam profile PF02666:
           phosphatidylserine decarboxylase
          Length = 635

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 281 KNVKEQFVNFSEKFKTKMNDFVSDSKNMIFTEDLKNMVHLAEPSDLQLVLNMIKKFN 451
           +  KE   N SEK   KMN   S      F E  K+ +++AE   ++  L+  K FN
Sbjct: 361 QGAKEILQNLSEKQGKKMNSVESAQNIPSFLEFFKDQINMAE---VKYPLDHFKTFN 414


>At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative
           (CHX26) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 780

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 364 HVFGIGDKIIHFSFKFLREIDKLFFDIF 281
           +V GIG+K+  FSF  LR+I  L F IF
Sbjct: 333 YVIGIGNKVDFFSFN-LRDIISLEFLIF 359


>At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 629

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +2

Query: 389 MVHLAEPSDLQLVLNMIKKFNTQSTEFRFGSFVFGPVVMRMFHFLDAPKEALQCFEEPAN 568
           M+   + SD   VL + ++   +   F     V+G + M+ +   +  KEA++C+EE   
Sbjct: 243 MMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQL-MKGYFMKEMEKEAMECYEEAVG 301

Query: 569 D 571
           +
Sbjct: 302 E 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,047
Number of Sequences: 28952
Number of extensions: 270181
Number of successful extensions: 659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)