Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h14
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   1.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   1.0  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   1.8  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   2.3  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   4.1  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    24   5.4  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    23   9.4  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    23   9.4  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    23   9.4  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    23   9.4  

>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 166 DLRSRRDTY*NPEKHQANKIRSD 234
           D+ SRRD + +   H++NKIR D
Sbjct: 42  DVSSRRDRHDSFRSHESNKIRRD 64


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 226 ESCWLDVSQDFNRYLVYFEDRRIKLIK 146
           E CW D+  DF    +Y+  R I  +K
Sbjct: 448 EKCWSDMFHDFQNQALYWISRYISTMK 474


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 247 WWKVNRNESCWLDVSQDFNRYLVYFEDRRIKLIKSR 140
           W+ VN  ES W D+  ++   LV   +++ K + S+
Sbjct: 89  WYNVNTRESVW-DIPDEYKAALVDEPEQQKKALSSK 123


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 40  SEYNNETINNIHDSIDMYRCKRETYSSEKHRAFHG 144
           SE +++T +  H S+D    +RE  S E+   FHG
Sbjct: 171 SEVSDDTGD--HGSVDELESEREGNSGEEEEEFHG 203


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 316 NFKCSVPHFPACSGHVSF 263
           ++KC V +FP CS   SF
Sbjct: 18  SYKCFVKYFPKCSVQSSF 35


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 116 HPRSIVHSTGLDEFDSPIFEVD 181
           H   + H+T L++ DS   EVD
Sbjct: 891 HEWELTHNTSLEDIDSTSLEVD 912


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 199 DFNRYLVYFEDRRIKLIKSRGMHDASRM 116
           D N YLV  ED  I +I S   H+ + +
Sbjct: 92  DLNNYLVSMEDVSIYVIDSHRPHNLNNI 119


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 104 GKHIHPRSIVHSTGLDEF 157
           G+HI P+  V+ TG+ +F
Sbjct: 201 GQHIVPQQAVYKTGIRDF 218


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 98  VSGKHIHPRSIVHSTGLDEFDSPIFEVDEIPIEILRNIKPT 220
           +SG   H + I+  +  DEF SP  +  ++      +I+PT
Sbjct: 233 ISGSTAHSQLILLMSERDEFVSPSTDKAQLLNRFRESIRPT 273


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 122 RSIVHSTGLDEFDSPIFEVDEIPIEILRNIKPTRFVPINF 241
           R ++    LD  + PI  V E+P E+L NI  +    INF
Sbjct: 623 RKVMPDENLD-LNCPINGVIEVPKELLENIIQSDDSLINF 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,730
Number of Sequences: 5004
Number of extensions: 23512
Number of successful extensions: 76
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)