Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h14
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0032 - 25067996-25068156,25068746-25068815,25069385-250695...    30   0.40 
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999...    29   0.71 
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398...    29   1.2  
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615...    28   1.6  
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246...    28   1.6  
06_03_0570 - 22363197-22363588,22363755-22366782                       27   3.8  
04_01_0254 + 3388215-3388553,3388869-3390830                           27   5.0  
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694...    26   8.7  

>05_06_0032 -
           25067996-25068156,25068746-25068815,25069385-25069532,
           25069611-25069726,25069799-25069877,25069960-25070030,
           25070139-25070348,25070445-25070453,25070824-25070968,
           25071297-25071332,25071428-25071494,25071591-25071624
          Length = 381

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 59  LLIIFTIVLTCIVVSGKH-IHPRSIVHSTGLDEF 157
           L+++FT+VLTC  +S +H + P   VH    D F
Sbjct: 98  LILLFTLVLTCSGLSNQHTMTPEIAVHGFPADNF 131


>12_02_0800 +
           23299674-23299678,23299714-23299791,23299876-23299920,
           23300052-23300415,23300493-23300574,23300793-23300873,
           23300974-23302106,23302202-23302350,23302426-23302516,
           23303628-23305940
          Length = 1446

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 213 SQQDSFRLTFHHAKRALKET*PEHAGKCGTEHLKFKQS 326
           +++   R +F+   R L ++ P+H G  GT HL   ++
Sbjct: 481 NKRSDIRESFNEKNRILMKSAPDHRGPAGTSHLSIPEN 518


>03_02_0875 +
           12038365-12039329,12039417-12039593,12039651-12039893,
           12040045-12040124,12040242-12040508,12040599-12040710,
           12040757-12041071,12041357-12041366
          Length = 722

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 26  RDASKANTIMKLLIIFTIVLTCIVVSGKHIHPRS 127
           + A K+  I  L + FTIV  CI+ SG+H  P S
Sbjct: 623 QQAYKSAIIPWLKVCFTIVCACILSSGEHNLPDS 656


>07_03_1779 -
           29458889-29459249,29461107-29461283,29461374-29461573,
           29461673-29462752
          Length = 605

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 256 LFAWWKVNRNESCWLDVSQ-DFNRYLVYFEDRRIKLIKSRG 137
           + AW  + ++ + W  V    FN Y+ +  + +IK++KSRG
Sbjct: 391 VIAWRSIAKHAANWKGVHYLVFNTYIWWLNNFQIKVLKSRG 431


>06_03_1403 +
           29923503-29923821,29924269-29924405,29924495-29924647,
           29924690-29925280,29925523-29925597,29925901-29926169,
           29927238-29927331
          Length = 545

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -3

Query: 232 RNESCWLDVSQDFNRYLVYFEDRRIKLIKSRGMHDASRMNMFPAYND 92
           +NE  W DV   +N        R  K IK R  H A RM     YND
Sbjct: 170 KNEQYWTDVEATYNETTPSHRRRNAKQIKDR-FHKA-RMIYTSGYND 214


>06_03_0570 - 22363197-22363588,22363755-22366782
          Length = 1139

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 280 SGHVSFKALFAWWKVNRNESCWLDVSQDFNR 188
           +GH  FKAL   + VN N  CWL  +   NR
Sbjct: 893 TGH-EFKALVLEYMVNGNLECWLHPTSYKNR 922


>04_01_0254 + 3388215-3388553,3388869-3390830
          Length = 766

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 250 AWWKVNRNESCWLDVSQDFNRYLVYFEDRRIKL 152
           +WWK N  E  W++     +R +    D R KL
Sbjct: 404 SWWKKNAPEEAWMEYEYHNSRGIHISRDFRNKL 436


>04_04_0348 + 24568834-24568904,24569019-24569148,24569310-24569459,
            24569546-24569650,24569808-24570029,24570162-24570274,
            24570371-24570470,24571125-24571325,24571401-24571549,
            24571624-24571765,24571851-24571991,24572098-24572286,
            24572622-24572835,24573198-24573291,24573671-24573905,
            24574242-24574433,24574919-24575017,24575443-24575532,
            24575709-24575912,24575994-24576269,24576974-24577096,
            24577453-24577608,24577686-24577802,24577878-24577957,
            24578173-24578377,24578485-24578687,24578882-24578933
          Length = 1350

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 205  SQDFNRYLVYFEDRRIKLIKS 143
            S+ F + L YF + RIKL+KS
Sbjct: 983  SEKFKQLLTYFLEDRIKLLKS 1003


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,672,618
Number of Sequences: 37544
Number of extensions: 136504
Number of successful extensions: 411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)