Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10h14
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44244| Best HMM Match : YSIRK_signal (HMM E-Value=0.33)             30   0.41 
SB_39647| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.94 
SB_54732| Best HMM Match : ADP_ribosyl_GH (HMM E-Value=6e-38)          27   2.9  
SB_51726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_23806| Best HMM Match : zf-CCHC (HMM E-Value=0.0069)                27   5.0  
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.7  

>SB_44244| Best HMM Match : YSIRK_signal (HMM E-Value=0.33)
          Length = 113

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 13/64 (20%), Positives = 30/64 (46%)
 Frame = +2

Query: 50  IMKLLIIFTIVLTCIVVSGKHIHPRSIVHSTGLDEFDSPIFEVDEIPIEILRNIKPTRFV 229
           ++ L +I  ++   +     H+   ++  +  L  F  P FE+  +P+++   ++ T F 
Sbjct: 40  VLNLAVILLVLTMRVPRKNMHLFVANMAFADTLSLFTIPAFEIISLPLQLPLPLRRTLFT 99

Query: 230 PINF 241
           P  F
Sbjct: 100 PYYF 103


>SB_39647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +2

Query: 41  ANTIMKLL-IIFTIVLTCIVVSGKHIHPRSIVHSTGLDEFDSPIFEVDEIPIEILRNIKP 217
           A TIM ++ I+ TI++  + ++G       +     +D +D  + E D +  E       
Sbjct: 2   AMTIMMVMNIMMTIMMVKVAINGNSYKHHGVGDGGAVDVYDDDVDE-DSVSYE------- 53

Query: 218 TRFVPINFPPCEEGLERDVTGTCREVW 298
            +F+ I  P C+  +     G CR  W
Sbjct: 54  DKFMMIRVPNCQHLIFLFSQGMCRRPW 80


>SB_54732| Best HMM Match : ADP_ribosyl_GH (HMM E-Value=6e-38)
          Length = 342

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 77  IVLTCIVVSGKHIHPRSIVHSTGLDEFDSPIFEVDEIPIEILRNIKPTRFVPINF 241
           I+  C V    H++P ++  +T +D       E++E   +   N   T  VP NF
Sbjct: 171 ILQACAVFEALHVNPTTLEKNTFIDNLIKTAVELEESQTD--NNSTSTTSVPSNF 223


>SB_51726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 104 GKHIHPRSIVHSTGLDEFDSPIFEVDEIPIEILRNIKPTRFVPINFPPCEEGLERDVT 277
           G+ +   S     G+ EFD+P++ +DE  I+    I P     I  P  E  L  +++
Sbjct: 43  GQIVKEHSAFPMVGVSEFDNPLYMLDETDIQ---RIAPDESPAIEPPGVENPLYAEIS 97


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 95  VVSGKHIHPRSIVHSTGLDEFDSPIFEVDEIPIE 196
           +VSGK   P     S   DEF+  +F+V++   E
Sbjct: 532 LVSGKSATPSPESDSEKFDEFEGTVFDVEDAKFE 565


>SB_23806| Best HMM Match : zf-CCHC (HMM E-Value=0.0069)
          Length = 290

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 204 ETSSQQDSFRLTFHHAKRALKET*PEHAGKCGTEH 308
           E+ +++ S R T     R ++    +H G CG+EH
Sbjct: 106 ESGAEKRSCRYTKCARNRKIRNPKKKHCGNCGSEH 140


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 43  EYNNETINNIHDSIDMYRCKRETYSSEKHRAF 138
           E   ET+ ++   I+  + K E+  +EKH+ F
Sbjct: 51  EKKKETVEDVKIEIEKLKAKLESLKNEKHQMF 82


>SB_5894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 119 PRSIVHSTGLDEFDSPIFEVDEIPIEILRNIK 214
           P S+ + +G+DEF+     + E+P ++L ++K
Sbjct: 9   PDSLANCSGIDEFNIEGNNIAELPEKLLSSLK 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,210,815
Number of Sequences: 59808
Number of extensions: 165780
Number of successful extensions: 475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)